On Mon, Jan 30, 2017 at 12:04 PM, Cathy Lee Gierke <leegi...@umn.edu> wrote:
> That is the obvious solution, but it doesn't seem correct: I have pdf > included in the description, and namespace files, yet it is being called > out. Additionally, aren't most of these pkgs in the packages included by > default? > No, they are not. Read the documentation and see the error And up until yesterday, I didn't have any of these problems. I've been > compiling and running this for several years. But now I want to release to > CRAN, so I've been fixing minor issues....and suddenly this mass of Notes. > I have no idea what you did previously to ignore this. But the behaviour/error you see is always caused by an incomplete NAMESPACE; its very common. Perhaps follow the advice from all the other replies. Best, Kasper > Thank you, > > Cathy Lee Gierke > > > *“Darkness cannot drive out darkness: only light can do that. Hate cannot > drive out hate: only love can do that.” * > *“The arc of the moral universe is long, but it bends towards justice.”* > *“Nothing in the world is more dangerous than sincere ignorance and > conscientious stupidity.” * > *“Never forget that everything Hitler did in Germany was legal.” * > *“Forgiveness is not an occasional act, it is a constant attitude.” * > *“Injustice anywhere is a threat to justice everywhere.” * > > ― Martin Luther King Jr. > > <http://www.goodreads.com/author/show/23924.Martin_Luther_King_Jr_> > > On Mon, Jan 30, 2017 at 10:52 AM, Brian G. Peterson <br...@braverock.com> > wrote: > > > The error you reference below is pretty clear, I think. > > > > You need to add imports for all the functions you're using from other > > packages. > > > > See: https://cran.r-project.org/doc/manuals/r-release/R-exts. > > html#Specifying-imports-and-exports > > > > Regards, > > > > Brian > > > > > > -- > > Brian G. Petersonhttp://braverock.com/brian/ > > Ph: 773-459-4973 <(773)%20459-4973> > > IM: bgpbraverock > > > > > > On Mon, 2017-01-30 at 10:39 -0600, Cathy Lee Gierke wrote: > > > > Yes, that seemed to get rid of the NOTE....but it doesn't seem to make > > much difference other than that. i.e., it seems to process the same > using > > CATkit vs CATkit_2.06.tar.gz! > > > > Here is the main error that I am getting. I just upgraded to the latest > R > > version, fyi. > > > > Everything was fine, a few minor warnings...now this. Description and > > namespace are proper. These pkgs should all be part of the R base, > aren't > > they? Anyone know why I should get these errors? Thanks! > > > > * checking R code for possible problems ... NOTE > > > > Actogram: no visible global function definition for ‘par’ > > > > Actogram: no visible global function definition for ‘barplot’ > > > > Actogram: no visible global function definition for ‘box’ > > > > Actogram: no visible global function definition for ‘text’ > > > > Actogram: no visible global function definition for ‘mtext’ > > > > Actogram: no visible binding for global variable ‘end’ > > > > AutoCorr: no visible global function definition for ‘par’ > > > > AutoCorr: no visible global function definition for ‘layout’ > > > > AutoCorr: no visible global function definition for ‘acf’ > > > > AutoCorr: no visible global function definition for ‘abline’ > > > > AutoCorr: no visible global function definition for ‘title’ > > > > AutoCorr: no visible global function definition for ‘mtext’ > > > > AutoCorr: no visible global function definition for ‘var’ > > > > AutoCorr: no visible binding for global variable ‘end’ > > > > CATCosinor: no visible global function definition for ‘par’ > > > > CATCosinor: no visible global function definition for ‘pdf’ > > > > CATCosinor: no visible global function definition for ‘jpeg’ > > > > CATCosinor: no visible global function definition for ‘png’ > > > > CATCosinor: no visible global function definition for ‘tiff’ > > > > ......... A zillion more for every function I have...... > > > > periCosinor: no visible global function definition for ‘par’ > > > > periCosinor: no visible global function definition for ‘fft’ > > > > Undefined global functions or variables: > > > > TukeyHSD abline acf aov as.raster axis barplot box boxplot ccf > > > > coefficients dev.cur dev.off drop1 end fft gray heat.colors image > > > > jpeg layout legend lines median model.tables mtext na.action na.omit > > > > palette par pdf pf plot plot.new png points rainbow rasterImage > > > > read.table str strwidth tail terrain.colors text tiff title ts var > > > > write.table > > > > Consider adding > > > > importFrom("grDevices", "as.raster", "dev.cur", "dev.off", "gray", > > > > "heat.colors", "jpeg", "palette", "pdf", "png", "rainbow", > > > > "terrain.colors", "tiff") > > > > importFrom("graphics", "abline", "axis", "barplot", "box", "boxplot", > > > > "image", "layout", "legend", "lines", "mtext", "par", > > > > "plot", "plot.new", "points", "rasterImage", "strwidth", > > > > "text", "title") > > > > importFrom("stats", "TukeyHSD", "acf", "aov", "ccf", "coefficients", > > > > "drop1", "end", "fft", "median", "model.tables", > > > > "na.action", "na.omit", "pf", "ts", "var") > > > > importFrom("utils", "read.table", "str", "tail", "write.table") > > > > to your NAMESPACE file. > > > > Cathy Lee Gierke > > > > > > *“Darkness cannot drive out darkness: only light can do that. Hate cannot > > drive out hate: only love can do that.” * > > *“The arc of the moral universe is long, but it bends towards justice.”* > > *“Nothing in the world is more dangerous than sincere ignorance and > > conscientious stupidity.” * > > *“Never forget that everything Hitler did in Germany was legal.” * > > *“Forgiveness is not an occasional act, it is a constant attitude.” * > > *“Injustice anywhere is a threat to justice everywhere.” * > > > > ― Martin Luther King Jr. > > > > <http://www.goodreads.com/author/show/23924.Martin_Luther_King_Jr_> > > > > On Mon, Jan 30, 2017 at 10:05 AM, Brian G. Peterson <br...@braverock.com > > > > wrote: > > > > On Mon, 2017-01-30 at 09:45 -0600, Cathy Lee Gierke wrote: > > > building ‘CATkit_2.06.tar.gz’ > > > > R CMD build creates a tarball > > > > > x-134-84-0-217:CATkit user$ *R CMD check CATkit* > > > > but you are checknig the directory, not the tarball. > > > > do > > > > R CMD check CATkit_2.06.tar.gz > > > > instead. > > > > Regards, > > > > Brian > > > > > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
