ou want. I like this a lot
better than "tags-search".
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
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e index file, and
immediately display all matches" is reasonable and probably other
Python coders had thought about it before. But I am wondering if I am
missing something obvious, as most people seem to be very happy with
exuberant ctags.
Thanks,
R.
On 21 Aug 2006 22:56:13 -0700, [EMAIL PROTE
I am generally happy with grep (and your code is much larger than
ours) but idutils' output offers both that and, by showing all
together, a kind of poor-man's static call graph, and can be of use
when refactoring.
Thanks again,
R.
On 22 Aug 2006 10:04:12 -0700, [EMAIL PROTECTED] &
tch, trying to find
> it in locals, globals, current class, etc and if not found like that, it
> goes and looks for the signature in a context-insensitive way, as if it was
> a simple text-search)
>
>
> > b) see all places where a function/whatever is used.
>
>
> This ca
nd we use them. These are incoveniences, not fatal
blows.
Best,
R.
>
> I.
>
> --
> http://mail.python.org/mailman/listinfo/python-list
>
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Ramon Diaz-Uriarte
Computational Statistics Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
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--
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); c)
eventually felt that time reading the Eclipse tutorial and docs would
be better spent reading more of the Emacs manual. I guess, though,
that this is very personal, and that I might be missing the point of
Eclipse (and I don't do any Java programming).
--
Ramon Diaz-Uriarte
Statis
ourse you can do the same with Python) and using the same
environment for all of my editing and programming tasks.
R.
--
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
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http://www.wana.at/vimshell/
Thanks for this link! It looks really interesting. I'll try to give it
a try ASAP.
One question, though: can you "send" a block of code to a Python shell
running in vimshell? (somehow like you can do in Emacs)?
R.
--
Ramon Diaz-Uriarte
Statistical
somewhere we don't
want, I'd anyway by very interested in a private email.
Best,
R.
> --
> \ "If you get invited to your first orgy, don't just show up |
> `\ nude. That's a common mistake. You have to let nudity |
> _o__)
;
> > Q9 should be "check all that apply" or otherwise qualified with "primarily".
> >
> > Q10 is missing other types of broadband such as what one might find at
> > school, and also have the option of multiple selections.
>
> --
> http://mail.python.org/mailman/listinfo/python-list
>
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Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
/doc/
and, in particular,
http://wiki.python.org/moin/BeginnersGuide/NonProgrammers.
If you are looking for a "book I'll pay money for", I'd recommend
"Core Python Programming", by Chun. It's a thick book, which will keep
you busy for a while, and assumes some
;> numpy.corrcoef(([1,2,3],[1,2,3]))
> array([[ 1., 1.],
>[ 1., 1.]])
> >>> sd.correlation(([1,2,3],[1,2,3]))
> (1, 0, 1.0)
>
>
> PPS:
>
> A compatible scipy binary (0.5.2?) for numpy 1.0 was announced some weeks
> back. Think currently many users suffer when trying to get started with
> incompatible most-recent libs of scipy and numpy.
> --
> http://mail.python.org/mailman/listinfo/python-list
>
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Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
Py 1.0:
>
> C:\develop\python\D4>python D4.py
> Elapsed time is 3.364887 seconds
>
> That is quite astonishing.
>
> If anyone wonders why I think Travis Oliphant and the NumPy team should
> be knighted, then this is the answer. The Mathworks' product only
> achieved 100%
as some python code to post for an abstract parser, or links
> to some informative tutorials, that would be great.
>
> --
> http://mail.python.org/mailman/listinfo/python-list145
>
A very nice module, with many links for extra info:
http://pyparsing.wikispaces.com/
--
Ramon Dia
nformatics applications we've developed, that use R and Python for
computations, and are now moving to framework).
Good luck!
R.
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
ch to begin with, and as your
> > needs become more complex, move to a framework. (This has been our own
> > path: we've used plain CGI for over a year for the web-based
> > bioinformatics applications we've developed, that use R and Python for
> > computations, and
ort to idutils). I have some additional information on
these issues at http://ligarto.org/rdiaz/idutils-et-al.html.
HTH,
R.
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
ut I find them "overwhelming", specially compared
to Karrigell; Zope I find even more overwhelming.
HTH,
R.
> --
> James Stroud
> UCLA-DOE Institute for Genomics and Proteomics
> Box 951570
> Los Angeles, CA 90095
>
> http://www.jamesstroud.com/116
> --
> http://mail.p
ood example of a different and
very neat approach to concurrency; somewhat similar Python solutions
can be found at Kamaelia and Candygram. Links and other stuff at:
http://codepoetics.com/wiki/index.php?title=Topics:CTM_in_other_languages#Concurrency_in_Python
)
--
Ramon Diaz-Uriarte
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
are
very fine editors.
Best,
R.
P.D: Another very nice editor, which can be extended using Python, is
vim. (But I have little experience with it.)
>
> suggestions?
>
> --
> http://mail.python.org/mailman/listinfo/python-list
>
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
On 9/15/06, Wildemar Wildenburger <[EMAIL PROTECTED]> wrote:
> Ramon Diaz-Uriarte wrote:
> >> c) can run programs right from within
> >
> > But of course. And, contrary to some others (e.g., JEdit, which I
> > think forces you to use Jython, so you are stuck
u might want to check Tinn-R,
which, regarding R, provides some similar functionality, and I think
it is also very nice for Python, LaTeX, etc.
HTH,
R.
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
On 9/15/06, Wildemar Wildenburger <[EMAIL PROTECTED]> wrote:
> Ramon Diaz-Uriarte wrote:
> > - I was referring to executing arbitrary sections of a Python file in
> > a Python interpreter in an "integrated way". When I tried JEdit, I
> > think that Jython was
On 17 Sep 2006 00:55:09 -0700, Paul Rubin
<"http://phr.cx"@nospam.invalid> wrote:
> "Ramon Diaz-Uriarte" <[EMAIL PROTECTED]> writes:
> > You might also want to check
> > http://www.lindaspaces.com/products/NWS_overview.html52
> > by the guys
ng
(or
http://wiki.python.org/moin/WebProgramming
for broader stuff).
Best,
R.
>
> Thanks
>
> --
> http://mail.python.org/mailman/listinfo/python-list
>
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
.norvig.com/21-days.html) has some very interesting
comments, further references, and comments on other languages.
HTH,
R.
> --
> http://mail.python.org/mailman/listinfo/python-list
>
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
nullifying the result of
> the Samurai Art of Warfare that required a life
> full of learning - in the end wiping out a
> complete culture.
>
> Same trend here - the reason is: 'cost' ;-)
>
>
> Regards & scnr
>
> Mirco
>
> f'up: clpm, clp
>
On 9/27/06, Mirco Wahab <[EMAIL PROTECTED]> wrote:
> Thus spoke Ramon Diaz-Uriarte (on 2006-09-27 11:01):
>
> >> When the Samurai of medieval Japan were confronted
> >> with new 'battlefield language', e.g. early Shotguns,
> >> they resisted bec
"Data Structures and Algorithms with Object Oriented Design Patterns"
(http://www.brpreiss.com/books/opus7/html/book.html) and was surprised.
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listi
On 9/28/06, Fredrik Lundh <[EMAIL PROTECTED]> wrote:
> Ramon Diaz-Uriarte wrote:
>
> > Going back to the original question, a related question: does anybody
> > know why there are so few books on data structures and algorithms that
> > use Python?
>
> Prob
curiosity, what were the pros/cons of Launchpad,
specially compared to Roundup?
R.
>
> Richard
>
> --
> http://mail.python.org/mailman/listinfo/python-list
>
--
Ramon Diaz-Uriarte
Bioinformatics Unit
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
>
>
> Beginning Python: From Novice to Professional by Magnus Lie Hetland
> Core Python Programming (2nd Edition) by Wesley Chun
>
> There are plenty of "Free" online ones as well.
>
> HTH
>
> Robert
>
> --
> http://mail.python.org/mailman/listinfo
n 80 and you often have hard to read
pages).
Best,
R.
--
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
And
which are these "newer ideas"; what programming languages are
incorporating them? (Scala, Mozart/Oz, Alice-ML, ...).
R.
> --
> http://mail.python.org/mailman/listinfo/python-list
>
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Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputi
chemes) with Erlang-like concurrency
http://toute.ca/
http://lambda-the-ultimate.org/node/841
Best,
R.
> --
> Dr Jon D Harrop, Flying Frog Consultancy
> Objective CAML for Scientists
> http://www.ffconsultancy.com/products/ocaml_for_scientists/index.html?usenet
> --
> http://mai
extremely popular in
bioinformatics and among statisticians who do bioinformatics (look at
bioconductor.org).
Ramon
--
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
bout concurrent/distributed programming? Is this your
first programming language? Etc, etc, etc. In the end, maybe neither
Python nor Fortran might be the best choices for you.
HTH,
R.
> --
> http://mail.python.org/mailman/listinfo/python-list
>
--
Ramon Diaz-Uriarte
Statistical Comput
ll standard C. But even if
it were, when people think of C they rarely think of CINT.
I think readers understood the previous poster.
Best,
R.
>
> Cheers,
>
> Carl Friedrich Bolz
>
> --
> http://mail.python.org/mailman/listinfo/python-list
>
--
Ramon Diaz-Uriarte
Statist
On 20 Jan 2007 11:34:46 -0800, Isaac Gouy <[EMAIL PROTECTED]> wrote:
>
> Ramon Diaz-Uriarte wrote:
> > On 1/20/07, Carl Friedrich Bolz <[EMAIL PROTECTED]> wrote:
> > > [EMAIL PROTECTED] wrote:
> > > >>> Looking over the benchmarks, one gains the
On 20 Jan 2007 14:19:12 -0800, Isaac Gouy <[EMAIL PROTECTED]> wrote:
>
> Ramon Diaz-Uriarte wrote:
> > On 20 Jan 2007 11:34:46 -0800, Isaac Gouy <[EMAIL PROTECTED]> wrote:
(...)
> > >
> > > And that's why the existence of CINT is such a stark remind
ties are elsewhere, as I've
> explained before. Python's developers and advocates have a declared
> goal of reaching as many users as they can, and as a user I don't mind
> offering suggestions about how to do that, but my responsibilities
> don't go any further.
is small and inexpensive and i carry on my backpack
all the time).
Best,
R.
>
> --
> WenSui Liu
> A lousy statistician who happens to know a little programming
> (http://spaces.msn.com/statcompute/blog)
> --
> http://mail.python.org/mailman/listinfo/python-list
>
--
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
--
http://mail.python.org/mailman/listinfo/python-list
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