Hi Troels,
cmd.save("filename.fasta")
will save the sequence of your PDB file in a file in fasta format. Then you
could open the file and put the content in a list.
cheers,
Osvaldo
-- Forwarded message --
> From: "Troels Emtekær Linnet"
> To: "pymol-users@lists.sourceforge.net
Thanks!
I put it on the wiki:
http://pymolwiki.org/index.php/Get_fastastr
Cheers
2012/2/8 Thomas Holder
> print cmd.get_fastastr('all')
>
> Cheers,
> Thomas
>
>
> On 02/08/2012 03:24 PM, Troels Emtekær Linnet wrote:
>
>> Hi.
>>
>> I have a pdb file, which is a modelled structure from another
print cmd.get_fastastr('all')
Cheers,
Thomas
On 02/08/2012 03:24 PM, Troels Emtekær Linnet wrote:
> Hi.
>
> I have a pdb file, which is a modelled structure from another sequence.
>
> I want to check the amino acid sequence in the structure.
> Does anyone know a one-liner in pymol which will e
