Hi Troels,
cmd.save("filename.fasta")
will save the sequence of your PDB file in a file in fasta format. Then you
could open the file and put the content in a list.
cheers,
Osvaldo
---------- Forwarded message ----------
> From: "Troels Emtekær Linnet" <tlin...@gmail.com>
> To: "pymol-users@lists.sourceforge.net" <PyMOL-users@lists.sourceforge.net
> >
> Cc:
> Date: Wed, 8 Feb 2012 15:24:37 +0100
> Subject: [PyMOL] One liner for getting amino acid sequence from pdb file
> Hi.
>
> I have a pdb file, which is a modelled structure from another sequence.
>
> I want to check the amino acid sequence in the structure.
> Does anyone know a one-liner in pymol which will extract the sequence
> in one-letter code?
>
> best
> Troels
>
>
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