Hi Martin,
> I use the following script to prepare small side chain fragment PDB
> files of mutants in PyMOL:
> http://pastebin.com/nDTZApHP
> I use the PyMOL built-in mutagenesis wizard and the sculpting wizard to
> locally optimize the side chains within the environment of the protein.
> For lar
Hi Leila,
There is no automated way to replace the base pair like there is for
editing proteins. You will need to use the builder to edit the
structure and remove the pair. Next, you stitch in the counterpart
using probably the "fuse" command.
Cheers,
-- Jason
On Wed, Feb 1, 2012 at 6:16 AM, le
Dear pymol users
I want to mutate one basepair in dna.
For example: GC > AT
Number of residues are as follows: G69 , C78.
How to do that.
Any help will highly appreciated.
--
Keep Your Developer Skills Current wit
Hi lina:
After you reached the mutagenisis wizzard, click on the amino acid you
wish to mutate. To subsitute another amino acid, click on "no mutation" icon
in the wizzard. then you can see all the other aminoacid appearing. From the
list click the one you wish to include and say ok. Jobs do
How can I mutate one residue into another in pymol?
I tried the wizard--> mutagenesis-->
but nothing coming out after done.
I might understand wrong.
Please let me know.
--
Thanks and best regards,
lina
--
WhatsUp Go
nbrack.fccc.edu/bbdep/bbdepdownload.php
Cheers,
Warren
From: Chandan Choudhury [mailto:iitd...@gmail.com]
Sent: Tuesday, September 22, 2009 9:28 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] mutation
Hello all!!
I am required to mutate one o
Hello all!!
I am required to mutate one of the atom of a protein (pdb file) with some
groups of atoms. Pymol features us to mutate a residu with another amino
acid, but I cannot mutate an atom with some other group that are not amino
acids. So, how can I do it. Please help.
Also I want to know th
