Chandan,
Apologies, but PyMOL can only mutate the standard 20 amino acids.
Note that you have asked that second question before:
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07211.h
tml
Again, there is no special "theory" behind PyMOL's mutagenesis wizard:
the intent behind the implementation is to simply provide geometric
substitution as per the Dunbrack rotomer library. No optimization is
performed. Please follow the link below for a list of related
references covering the Dunbrack library and sidechain rotamer theory:
http://dunbrack.fccc.edu/bbdep/bbdepdownload.php
Cheers,
Warren
________________________________
From: Chandan Choudhury [mailto:iitd...@gmail.com]
Sent: Tuesday, September 22, 2009 9:28 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] mutation
Hello all!!
I am required to mutate one of the atom of a protein (pdb file) with
some groups of atoms. Pymol features us to mutate a residu with another
amino acid, but I cannot mutate an atom with some other group that are
not amino acids. So, how can I do it. Please help.
Also I want to know the theory behind the mutation of residue done by
pymol.
Thanks
Chandan
--
Chandan kumar Choudhury
NCL, Pune
INDIA
------------------------------------------------------------------------------
Come build with us! The BlackBerry® Developer Conference in SF, CA
is the only developer event you need to attend this year. Jumpstart your
developing skills, take BlackBerry mobile applications to market and stay
ahead of the curve. Join us from November 9-12, 2009. Register now!
http://p.sf.net/sfu/devconf
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
