Hi Joel,
Unless I'm misunderstanding, the label command, label menu, and the label
wizard all support proteins and nucleic acids. Do you have an example where
that's not the case?
Best,
Jarrett J.
On Wed, Apr 3, 2024 at 4:16 AM Joel Mackay via PyMOL-users <
pymol-users@lists.sourceforge.net> wro
Hi
Am using pymol 3. Am I correct in thinking that you can't use the 'label'
dialogues to label nucleotides in a nucleic acid? Only proteins?
Thanks
Joel
-
Professor Joel M
Hi Vaheh,
1. I couldn't reproduce "only one side shows labels", but there was an aspect
ration problem which is fixed in SVN rev 4070.
I can't reproduce 2., maybe it is also already fixed? If not, what are the
steps to reproduce it?
Cheers,
Thomas
On 05 Mar 2014, at 14:19, Oganesyan, Vaheh
PyMOLers,
I've installed PyMOL version 1.7.0.1 on my new laptop running Win 7, 64-bit.
Number of issues:
1. Side-by-side stereo shows only one side in cross- or wall-eye mode and both
when ray-traced;
2. Labels can be generated, but I can move in editing mode only the label that
was generate
Hi pymolers.
I have this strange problem, that labels
are not showing, unless I use the ray command.
Anyone experience the same?
image1: http://snag.gy/fhk3J.jpg
image2: http://snag.gy/0143z.jpg
fetch 1lev, async=0
preset.publication(selection='all')
remove chain F
select substrat
Hi,
I have PyMOL-0.99rc6 in SuSE Pro 9.3. I have a script that generates
labels in the screen. At the end I generate a PNG output. All of this
works when I use PyMOL interactively. The output PNG file is fine.
But when I run PyMOL in batch mode (-c flag), the PNG file created does
not show the la
This is an unusual and annoying problem.
I'm running the latest version of Pymol on two PC machines, one in my
office and one at home. I cart my session file on a jump drive back and
forth. On my PC at home, the session file displays the labels just fine
and dandy. But using the same session f
Hi everyone,
I got a odd problem with labeling:
I used:
label resi 196 and name c, "%s %s" % (resn, resi)
set label_color, black
set label_font_id, 4
To shift the label I "shift-middle-click-drag (in 3-Button-editing-mode)"
but I get a duplication of the label?
When I opened another pse-file
ymol-users-ad...@lists.sourceforge.net
> > [mailto:pymol-users-ad...@lists.sourceforge.net] On
> Behalf Of
> > Alex Luso
> > Sent: Thursday, January 19, 2006 9:09 AM
> > To: pymol-users@lists.sourceforge.net
> > Subject: [PyMOL] Labels throw shadows in Ray traced
&
pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Alex Luso
> Sent: Thursday, January 19, 2006 9:09 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Labels throw shadows in Ray traced images -
> possible to turn off?
>
>
> Hi,
>
> I noticed that
Hi,
I noticed that Ray traced output of images containing
text labels will show the shadows thrown by and on these
labels. This is a nice feature but is there also an easy
way to turn this off (i.e. selectively turn off shadows
from/on text while mantaining global shadows)?
Thanks,
-Alex
l Message-
> From: pymol-users-ad...@lists.sourceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Tjaart de Beer
> Sent: Wednesday, May 11, 2005 1:15 AM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Labels
>
> Hi
>
> How can
Hi
How can I get my labels to appear in front of a cartoon representation
of a protein? Currently I have a decent text size but the text is
obscured by the cartoon folding over it. Any help would be appreciated!!
Thanks!!
--
Tjaart de Beer
Bioinformatics and Computational Biology Unit
Departm
I have just installed the new release of PyMol and was particularly
pleased that labels can now be rendered. Then it occured to me that I
actually don't know how to label a residue Tyr84 (or whatever) and have
the label positioned next to the residue.
Any hints would be appreciated.
Also, am I
ceforge.net
> [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of
> Björn Kauppi
> Sent: Sunday, February 15, 2004 1:59 PM
> To: pymol-users@lists.sourceforge.net
> Subject: [PyMOL] Labels not stored in scenes
>
> Hi,
> I noticed today that labels (other than distances) is not
Hi,
I noticed today that labels (other than distances) is not stored in scenes.
Could be very handy in a "live" presentation to have pre-labeled residues. Is
this hard to implement, or just an oversight?
Björn Kauppi
***
Th
lists.sourceforge.net
> Subject: [PyMOL] labels
>
>
> Dear all:
>
> What do I need to do avoid losing the labels when I ray trace?
>
> Thank you again
>
> Jose
>
>
>
> ---
> SF.Net is sponsored
Dear all:
What do I need to do avoid losing the labels when I ray trace?
Thank you again
Jose
Hello to all,
Can anybody tell why the labels disappear after the rendering and if
there is a way to include labels in the ray-traced images.
Alex
om: pymol-users-ad...@lists.sourceforge.net
[mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Scott
Classen
Sent: Tuesday, June 03, 2003 8:12 AM
To: roidis alexandros
Cc: pymol-users@lists.sourceforge.net
Subject: Re: [PyMOL] Labels
On Tuesday, June 3, 2003, at 06:00 AM, roidis a
On Tuesday, June 3, 2003, at 06:00 AM, roidis alexandros wrote:
Does anybody know how to include labels in ray-traced images
Thanx
Hi,
Open the png file in photoshop or illustrator and add them. I don't
think PyMol can add ray traced labels yet.
Scott
Does anybody know how to include labels in ray-traced images
Thanx
o: "pymol-users@lists.sourceforge.net"
> Subject: [PyMOL] labels again
>
> Dear colleagues:
>
> I've been looking for a way to add labels to my figures.
> After a search in the e-mail list files, I could draw cgo labels, although it
> would be a pain
Dear colleagues:
I've been looking for a way to add labels to my figures.
After a search in the e-mail list files, I could draw cgo labels, although it
would be a pain to
orient them by hand using cmd.rotate and cmd.translate (too many figures).
So, in the case of mono, I have used photoshop to
FAO: Chris Rife.
Chris,
To get labels on ray-traced images use the method that follows.
* Before ray-tracing decide what labels you want
* Hide everything of the current image
* Select show labels
* You will need to change the colour of the labels, as they adopt the
same
* Chris Rife [2002-05-10 10:47] wrote:
> I am making some stereo images and would like to put in some labels that
> will move with the model. When I use the "label" command, the labels are
> okay but they disappear with ray tracing. Is there any way around this,
> other than adding in the label
Hi,
I am making some stereo images and would like to put in some labels that
will move with the model. When I use the "label" command, the labels are
okay but they disappear with ray tracing. Is there any way around this,
other than adding in the labels in an image editing program?
Thanks,
C
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