Re: [PyMOL] Electron density maps

2011-12-01 Thread Jason Vertrees
Hi Sree, After your map is loaded click: Wizard > Density. The map will replicate according to the symmetry operators. Cheers, -- Jason On Thu, Dec 1, 2011 at 12:53 PM, SREEJESH SHANKER wrote: > Hi > > I am having trouble to generate an electron density map (2FoFc) around some > selected resid

[PyMOL] Electron density maps

2011-12-01 Thread SREEJESH SHANKER
Hi I am having trouble to generate an electron density map (2FoFc) around some selected residues and metal ion ligand. I have data as MTZfile which I use to generate my map using FFT in ccp4i then further add a .ccp4 extension for pymol to read. Then I give the map double command select the resid

Re: [PyMOL] electron density maps

2004-08-08 Thread Filipe Maia
On Sun, 08 Aug 2004 17:57:00 -0400, christopher faehnle wrote: I am a new pymol user and am trying to load an electron density map (ccp4 format). When I do this nothing happens. Any suggestions, tips, etc would be appreciated. The map probably loads just fine (there should be a new obj

[PyMOL] electron density maps

2004-08-08 Thread christopher faehnle
I am a new pymol user and am trying to load an electron density map (ccp4 format). When I do this nothing happens. Any suggestions, tips, etc would be appreciated. Thanks funne...@hotmail.com _ Express yourself instantly with MS

RE: [PyMOL] electron density maps

2002-09-20 Thread DeLano, Warren
sen [mailto:clas...@uclink.berkeley.edu] > Sent: Friday, September 20, 2002 3:11 PM > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] electron density maps > > > Hello fellow PyMOL users, > I am trying to display a ccp4 map over just a ligand. I have > successfully read in th

[PyMOL] electron density maps

2002-09-20 Thread Scott Classen
Hello fellow PyMOL users, I am trying to display a ccp4 map over just a ligand. I have successfully read in the map and displayed it around the ligand with: isomesh msh1, map1, 1.5, myobject but the map has bits and peices of the surrounding sidechains. Is there a way to only display the map