Re: [PyMOL] drawing and formating bonds between atoms

2012-01-31 Thread Jason Vertrees
dissapear.. How can I prevent it? > > Thanks again, and sorry for beeing that noob. > > Gonzalo > >> From: jason.vertr...@schrodinger.com >> Date: Tue, 31 Jan 2012 15:07:51 -0500 >> Subject: Re: [PyMOL] drawing and formating bonds between atoms >> To: gonza_pa.

Re: [PyMOL] drawing and formating bonds between atoms

2012-01-31 Thread Gonzalo Parra
Tue, 31 Jan 2012 15:07:51 -0500 > Subject: Re: [PyMOL] drawing and formating bonds between atoms > To: gonza_pa...@hotmail.com > CC: pymol-users@lists.sourceforge.net > > Gonzalo, > > Just pick a bond and issue the following setting command to make colored > lines: >

Re: [PyMOL] drawing and formating bonds between atoms

2012-01-31 Thread Jason Vertrees
Gonzalo, Just pick a bond and issue the following setting command to make colored lines: set_bond line_color, yourColor, sele You can also use set_bond stick_color, yourColor, sele for sticks. "sele" should be the two bound atoms. Cheers, -- Jason On Tue, Jan 31, 2012 at 1:51 PM, Gonzalo

[PyMOL] drawing and formating bonds between atoms

2012-01-31 Thread Gonzalo Parra
Hello everyone,I was trying to make a pymol script. I have to draw different lines in my pdb structure with different colors.So, I find the way to draw a bond between to atoms, for example."bond resi 234 and resn GLU and name CA, resi 259 and resn SER and name CA" But it always draw the bond wi