Gonzalo, The cartoon representation is a stylized representation of the structure using backbone atoms as guides. Setting stick_color or line_color on a cartoon won't help -- you need to show lines or sticks. If you need sticks/lines back just type:
show lines, sele or show sticks, sele where "sele" is your selected atoms. Cheers, -- Jason On Tue, Jan 31, 2012 at 3:31 PM, Gonzalo Parra <gonza_pa...@hotmail.com> wrote: > Sorry guys, it's me again. > > It worked while I was seeing the structure in lines style, but when I change > the style to cartoon, the bonds that I set dissapear.. How can I prevent it? > > Thanks again, and sorry for beeing that noob. > > Gonzalo > >> From: jason.vertr...@schrodinger.com >> Date: Tue, 31 Jan 2012 15:07:51 -0500 >> Subject: Re: [PyMOL] drawing and formating bonds between atoms >> To: gonza_pa...@hotmail.com >> CC: pymol-users@lists.sourceforge.net > >> >> Gonzalo, >> >> Just pick a bond and issue the following setting command to make colored >> lines: >> >> set_bond line_color, yourColor, sele >> >> You can also use >> >> set_bond stick_color, yourColor, sele >> >> for sticks. >> >> "sele" should be the two bound atoms. >> >> Cheers, >> >> -- Jason >> >> >> On Tue, Jan 31, 2012 at 1:51 PM, Gonzalo Parra <gonza_pa...@hotmail.com> >> wrote: >> > Hello everyone, >> > >> > I was trying to make a pymol script. I have to draw different lines in >> > my >> > pdb structure with different colors. >> > >> > So, I find the way to draw a bond between to atoms, for example. >> > >> > "bond resi 234 and resn GLU and name CA, resi 259 and resn SER and name >> > CA" >> > >> > >> > But it always draw the bond with the same color. And I wasn't able to >> > change >> > a bond color without changing every bonds color. >> > >> > >> > How can I color one specific bond color, for example just the bond that >> > bonds resi 234 and resn GLU and name CA and resi 259 and resn SER and >> > name >> > CA? >> > >> > >> > Thanks in advance >> > >> > Gonzalo >> > >> > >> > >> > ------------------------------------------------------------------------------ >> > Keep Your Developer Skills Current with LearnDevNow! >> > The most comprehensive online learning library for Microsoft developers >> > is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, >> > Metro Style Apps, more. Free future releases when you subscribe now! >> > http://p.sf.net/sfu/learndevnow-d2d >> > _______________________________________________ >> > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) >> > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users >> > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net >> >> >> >> -- >> Jason Vertrees, PhD >> PyMOL Product Manager >> Schrodinger, LLC >> >> (e) jason.vertr...@schrodinger.com >> (o) +1 (603) 374-7120 -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Keep Your Developer Skills Current with LearnDevNow! The most comprehensive online learning library for Microsoft developers is just $99.99! Visual Studio, SharePoint, SQL - plus HTML5, CSS3, MVC3, Metro Style Apps, more. Free future releases when you subscribe now! http://p.sf.net/sfu/learndevnow-d2d _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
