Sorry guys, it's me again.
It worked while I was seeing the structure in lines style, but when I change
the style to cartoon, the bonds that I set dissapear.. How can I prevent it?
Thanks again, and sorry for beeing that noob.
Gonzalo
> From: jason.vertr...@schrodinger.com
> Date: Tue, 31 Jan 2012 15:07:51 -0500
> Subject: Re: [PyMOL] drawing and formating bonds between atoms
> To: gonza_pa...@hotmail.com
> CC: pymol-users@lists.sourceforge.net
>
> Gonzalo,
>
> Just pick a bond and issue the following setting command to make colored
> lines:
>
> set_bond line_color, yourColor, sele
>
> You can also use
>
> set_bond stick_color, yourColor, sele
>
> for sticks.
>
> "sele" should be the two bound atoms.
>
> Cheers,
>
> -- Jason
>
>
> On Tue, Jan 31, 2012 at 1:51 PM, Gonzalo Parra <gonza_pa...@hotmail.com>
> wrote:
> > Hello everyone,
> >
> > I was trying to make a pymol script. I have to draw different lines in my
> > pdb structure with different colors.
> >
> > So, I find the way to draw a bond between to atoms, for example.
> >
> > "bond resi 234 and resn GLU and name CA, resi 259 and resn SER and name CA"
> >
> >
> > But it always draw the bond with the same color. And I wasn't able to change
> > a bond color without changing every bonds color.
> >
> >
> > How can I color one specific bond color, for example just the bond that
> > bonds resi 234 and resn GLU and name CA and resi 259 and resn SER and name
> > CA?
> >
> >
> > Thanks in advance
> >
> > Gonzalo
> >
> >
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>
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrodinger, LLC
>
> (e) jason.vertr...@schrodinger.com
> (o) +1 (603) 374-7120
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