Re: [PyMOL] Script from command line invoking plugins

2014-04-04 Thread Thomas Holder
Hi Matt, plugins are not loaded automatically in headless mode. You have to import your plugin first if you want to use it from a script. Something like: import pmg_tk.startup.yourplugin The plugin manager tells you the python module name of your plugin when you click on "Info". Cheers, Tho

Re: [PyMOL] Script from command line invoking plugins

2014-04-01 Thread Matthew Baumgartner
Hi, If you don't need the GUI you can access your command using the extend command. In your script, put something like: from pymol import cmd def foo(bar): print bar cmd.extend('foo', foo) Then in pymol first use the 'run' command to have pymol read your script, and then call the funct

[PyMOL] Script from command line invoking plugins

2014-04-01 Thread mantesat
Hi all, I'm trying to run a PyMOL script from command line that invokes some custom plugins I've written. Everything works as supposed in GUI mode, but when running the script from command line, the parser complains that can't find any of the plugin commands included in the PyMOL script. This