Hi all,

I'm trying to run a PyMOL script from command line that invokes some 
custom plugins I've written. Everything works as supposed in GUI mode, 
but when running the script from command line, the parser complains that 
can't find any of the plugin commands included in the PyMOL script.

This is the message I'm getting:

Traceback (most recent call last):
   File "/home/matt/PyMOL/modules/pymol/parser.py", line 464, in parse
     exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
   File "<string>", line 1
      cellcalc 3,3,3


Any ideas?

Thanks in advance

matt

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