[PyMOL] Re: How to run PyMol from within Python?

Johan, "JL" == Johan Leckner wrote: JL> So there is no way to run and control PyMol from within another python JL> program? Why? There is! [...] JL> Has anyone been able to run and quit PyMol from within python without JL> killing the interpreter? Is it possible? How? Here's a script, th

[PyMOL] Re: image quality

Chris, "CR" == Chris Rife wrote: CR> I'm using Pymol to make some images for a paper and a poster, and I've CR> run across a problem. I can generate images that are beautiful on my CR> screen (when ray traced and then viewed as the png file), but when I CR> print them out they become extremel

[PyMOL] Re: "ray" doubts

Ricardo, "RA" == Ricardo Aparicio wrote: RA> - is it necessary? Does it make great difference in the final quality of RA> figures published (in the case of a paper)? Yes, ray-traced images have much better quality than simple and fast render for interactive use. RA> - does it renderize(?) a

[PyMOL] Re: Installing Pymol on SuSE 7.3 again

Marc, "MS" == Marc Saric wrote: MS> Bottomline: The precompiled rpm-binaries seem to be broken -at least MS> they don't for SuSE 7.3. They work for me :) -- Andrey V Khavryuchenko http://www.kds.com.ua/ Offshore Software Development

[PyMOL] Re: Installing Pymol on SuSE-Linux 7.3 fails

Marc, I'm the person, who build the rpm. I'm using Red Hat and package works flawlessly (as far as I need). "MS" == Marc Saric wrote: MS> Hi all, MS> I recently downloaded the rpm-packages available from the MS> pymol-sourceforge-site MS> (i.e. MS> Numeric-20.2.1-1.i386.rpm MS> Pmw-0.8.

[PyMOL] Re: Selecting objects to move

Glen, "GLP" == Glen L Prosise wrote: GLP> Is 0.73 out? I only see 0.68 on your download site. I guess it's in CVS. Right? -- Andrey V Khavryuchenko http://www.kds.com.ua/ Offshore Software Development

[PyMOL] Re: pymol sys.argv, winnt, barks

Warren, "DW" == DeLano, Warren wrote: DW> import sys DW> sys.argv = copy.deepcopy(argv) DW> Directly under "def parse_args(argv):" (line 79) in DW> PyMOL/modules/pymol/invocation.py. Will try. [...] DW> pymol -c myscript.py -- -pymol -will -ignore -these -arguments DW> pymol -c myscri

[PyMOL] Re: pymol sys.argv, winnt, barks

Frank, "FV" == Frank Vondelft wrote: FV> I deduce you're referring to windows? Yes. FV> I think this is what you get when python gets installed in C:\Program FV> Files\python or some other location that is not on the (hardcoded?) FV> search path of pymol, which means it can't find the tcl

[PyMOL] pymol sys.argv, winnt, barks

Hi! Is it only me who gets the following: for i in argv: print i [...] $ pymol -c mov.py [...] Hit ESC anytime to toggle between text and graphics. Command mode. No graphics front end. Traceback (most recent call last): File "C:\Program Files\DeLano Scientific\PyMOL/modules\pymol\parse

[PyMOL] Re: pymol segfaults

Warren, "WLD" == Warren L DeLano wrote: WLD> Running "pymol -c script.py" is almost equivalent to "python WLD> script.py" for command-line only mode. Ok, that does exactly what I wanted -- run pymol in batch mode. Thanks! -- Andrey V Khavryuchenko http://www.kds.com.ua/ Offshore

[PyMOL] pymol segfaults

Hi! I've got the following problem (it may be tied to python v2 that I'm using): [akh...@netmaster molmov]$ PYMOL_PATH=~/src/pymol/modules/ PYTHONPATH=/homvr/src/pymol/modules/ gdb python2 GNU gdb 5.0 Copyright 2000 Free Software Foundation, Inc. GDB is free software, covered by the GNU General

[PyMOL] pymol rpms are available

Hi! Pymol 0.68 RPMs (both source and i386) are available at http://office.kds.com.ua/~akhavr/pymol/ The packages are build for python 2.1, since latest Numeric is supported only for python 2. Bug reports are welcome. -- Andrey V Khavryuchenko http://www.kds.com.ua/ Offshore

[PyMOL] pymol as rpm anyone?

Hello! Had anyone created an RPM for pymol? Even .spec would be good. Thanks in advance! -- Andrey V Khavryuchenko http://www.kds.com.ua/ Offshore Software Development