Hi!
I've got the following problem (it may be tied to python v2 that I'm
using):
[akh...@netmaster molmov]$ PYMOL_PATH=~/src/pymol/modules/
PYTHONPATH=/homvr/src/pymol/modules/ gdb python2
GNU gdb 5.0
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This GDB was configured as "i386-redhat-linux"...
(no debugging symbols found)...
(gdb) run
Starting program: /usr/bin/python2
[New Thread 1024 (LWP 3246)]
Python 2.1.1 (#1, Aug 13 2001, 19:37:40)
[GCC 2.96 20000731 (Red Hat Linux 7.1 2.96-96)] on linux2
Type "copyright", "credits" or "license" for more information.
>>> from glob import glob
>>> import thread
>>> import threading
>>> import os
>>> import sys
>>> import time
>>> from pymol import cmd
>>> cmd.hide("lines")
Program received signal SIGSEGV, Segmentation fault.
[Switching to Thread 1024 (LWP 3246)]
0x402fc2be in APIEntry () at Cmd.c:106
106 PRINTFD(FB_API)
(gdb) bt
#0 0x402fc2be in APIEntry () at Cmd.c:106
#1 0x40301b98 in CmdShowHide (self=0x0, args=0x8113d64) at Cmd.c:2517
#2 0x80593ed in PyEval_CallObjectWithKeywords () at eval.c:41
#3 0x8057c75 in PyEval_EvalCode () at eval.c:41
#4 0x80597dd in PyEval_CallObjectWithKeywords () at eval.c:41
#5 0x8057d44 in PyEval_EvalCode () at eval.c:41
#6 0x80550d5 in PyEval_EvalCode () at eval.c:41
#7 0x806e031 in PyRun_FileExFlags () at eval.c:41
#8 0x806d0fc in PyRun_InteractiveOneFlags () at eval.c:41
#9 0x806cf5e in PyRun_InteractiveLoopFlags () at eval.c:41
#10 0x806ce2d in PyRun_AnyFileExFlags () at eval.c:41
#11 0x8051f30 in Py_Main () at eval.c:41
#12 0x40084777 in __libc_start_main (main=0x80519d0 <main>, argc=1,
ubp_av=0xbffff704, init=0x8050e38 <_init>, fini=0x80a48f0 <_fini>,
rtld_fini=0x4000dd44 <_dl_fini>, stack_end=0xbffff6fc)
at ../sysdeps/generic/libc-start.c:129
(gdb)
Red Hat Linux 7.2
Pmw-0.8.5-1
Numeric-20.2.1-1
pymol both 0.68 and CVS versions
This happens only if I try to run python script utilizing pymol directly
from python. Launching via 'pymol script.py' goes ok.
What I'm doing wrong?
--
Andrey V Khavryuchenko http://www.kds.com.ua/
Offshore Software Development
