Thank you both for taking the time to work this out, and explain how and why it
works!
> On Apr 26, 2016, at 8:14 AM, Thomas Holder
> wrote:
>
> Hi Adam and Annemarie,
>
> There are no alt location in these files. In the slash notation, the second
> item is the segment identifier, which fo
OK, after some trial and error I have found out a way that works.
The two structures have the corresponding chains in different orders and with
different chain labels:
You can copy-paste the following commands into Pymol to follow that I did:
#---
Hi Adam and Annemarie,
There are no alt location in these files. In the slash notation, the second
item is the segment identifier, which for mmCIF files in the label_asym_id
field (the third item, chain, is the auth_asym_id field). For this example, the
label_asym_id (segi) should be easier to
When I use the remove command it seems to be removing atoms. There is no
explanation in the pymol wiki about how to specify details to the command.
Since I have multiple chains I’m not sure if I have to use it multiple times
(once on each chain) and I’m also not sure if I have to specify the fir
I ask because if I use the command "remove (not alt “”+A)” every atom is erased
from the session.
> On Apr 26, 2016, at 6:16 AM, harold steinberg
> wrote:
>
> Hi Annemarie,
>
> Thank you for the answer. Do you know the command to remove the alternative
> conformation?
>
>
>> On Apr 26, 20
Hi Annemarie,
Thank you for the answer. Do you know the command to remove the alternative
conformation?
> On Apr 26, 2016, at 4:31 AM, Honegger Annemarie wrote:
>
> Hi Adam
>
> This additional letter means that you have an alternative conformation for
> the atom, therefore you do not have a
Hi Adam
This additional letter means that you have an alternative conformation for the
atom, therefore you do not have a 1:1 correspondence between the
atoms in the two endpoints of the morph. If you eliminate the alternative
conformations (remove (not alt “”+A)) or restrict the selection to t
