Hi Annemarie, Thank you for the answer. Do you know the command to remove the alternative conformation?
> On Apr 26, 2016, at 4:31 AM, Honegger Annemarie <honeg...@bioc.uzh.ch> wrote: > > Hi Adam > > This additional letter means that you have an alternative conformation for > the atom, therefore you do not have a 1:1 correspondence between the > atoms in the two endpoints of the morph. If you eliminate the alternative > conformations (remove (not alt “”+A)) or restrict the selection to those > atoms, the morph should work. > > best regards > > Annemarie > _______________________________ > > Dr. Annemarie Honegger PhD > Department > of Biochemistry > Zürich University > Winterthurerstrasse 190 > CH-8057 Zürich > Switzerland > > e-Mail: honeg...@bioc.uzh.ch > > websites > http://www.bioc.uzh.ch/plueckthun > http://www.bioc.uzh.ch/plueckthun/antibody > http://www.bioc.uzh.ch/plueckthun/nanowelt > > > > > >> >> >> Message: 6 >> Date: Mon, 25 Apr 2016 20:54:01 -0500 >> From: harold steinberg <h.adam.steinb...@gmail.com> >> Subject: [PyMOL] morph issues >> To: pymol-users <pymol-users@lists.sourceforge.net> >> Message-ID: <0e82e310-1d03-40cd-838d-50616a246...@gmail.com> >> Content-Type: text/plain; charset="utf-8" >> >> Hi all, >> >> I need to generate a morph from 3J5R to 3J5Q. When I load both files and >> generate the morph, it?s all messed up. When I generate a morph of other >> structures it works just fine. >> >> In the structures that do not morph correctly a sample selection is: >> /3j5r/A/B/ILE`573/CD1 >> /3j5q/C/E/ILE`573/CD1 >> >> Notice that these files have an extra letter (?A? and ?C? before the chain >> identifier). >> >> In files that the morph does work this letter is missing (it?s a blank >> space): >> /3lut//D/GLY`338/CA >> >> Is that what is messing up the morph? >> >> >> H. Adam Steinberg >> 7904 Bowman Rd >> Lodi, WI 53555 >> 608/592-2366 >> >> -------------- next part -------------- >> An HTML attachment was scrubbed... >> >> ------------------------------ >> >> ------------------------------------------------------------------------------ >> Find and fix application performance issues faster with Applications Manager >> Applications Manager provides deep performance insights into multiple tiers >> of >> your business applications. It resolves application problems quickly and >> reduces your MTTR. Get your free trial! >> https://ad.doubleclick.net/ddm/clk/302982198;130105516;z >> >> ------------------------------ >> >> _______________________________________________ >> PyMOL-users mailing list >> PyMOL-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/pymol-users >> >> >> End of PyMOL-users Digest, Vol 119, Issue 16 >> ******************************************** > > > ------------------------------------------------------------------------------ > Find and fix application performance issues faster with Applications Manager > Applications Manager provides deep performance insights into multiple tiers of > your business applications. It resolves application problems quickly and > reduces your MTTR. Get your free trial! > https://ad.doubleclick.net/ddm/clk/302982198;130105516;z > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net H. Adam Steinberg 7904 Bowman Rd Lodi, WI 53555 608/592-2366 ------------------------------------------------------------------------------ Find and fix application performance issues faster with Applications Manager Applications Manager provides deep performance insights into multiple tiers of your business applications. It resolves application problems quickly and reduces your MTTR. Get your free trial! https://ad.doubleclick.net/ddm/clk/302982198;130105516;z _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
