Hi Adam
This additional letter means that you have an alternative conformation for the
atom, therefore you do not have a 1:1 correspondence between the
atoms in the two endpoints of the morph. If you eliminate the alternative
conformations (remove (not alt “”+A)) or restrict the selection to those
atoms, the morph should work.
best regards
Annemarie
_______________________________
Dr. Annemarie Honegger PhD
Department
of Biochemistry
Zürich University
Winterthurerstrasse 190
CH-8057 Zürich
Switzerland
e-Mail: honeg...@bioc.uzh.ch
websites
http://www.bioc.uzh.ch/plueckthun
http://www.bioc.uzh.ch/plueckthun/antibody
http://www.bioc.uzh.ch/plueckthun/nanowelt
>
>
> Message: 6
> Date: Mon, 25 Apr 2016 20:54:01 -0500
> From: harold steinberg <h.adam.steinb...@gmail.com>
> Subject: [PyMOL] morph issues
> To: pymol-users <pymol-users@lists.sourceforge.net>
> Message-ID: <0e82e310-1d03-40cd-838d-50616a246...@gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi all,
>
> I need to generate a morph from 3J5R to 3J5Q. When I load both files and
> generate the morph, it?s all messed up. When I generate a morph of other
> structures it works just fine.
>
> In the structures that do not morph correctly a sample selection is:
> /3j5r/A/B/ILE`573/CD1
> /3j5q/C/E/ILE`573/CD1
>
> Notice that these files have an extra letter (?A? and ?C? before the chain
> identifier).
>
> In files that the morph does work this letter is missing (it?s a blank space):
> /3lut//D/GLY`338/CA
>
> Is that what is messing up the morph?
>
>
> H. Adam Steinberg
> 7904 Bowman Rd
> Lodi, WI 53555
> 608/592-2366
>
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