Re: [PyMOL] Change thickness of hydrogen bonds?

Hi, Jorge The setting you need to change is the width of the dashes Cheers, Osvaldo. On Thu, Jul 2, 2015 at 5:26 PM, Jorge Fernandez de Cossio Diaz < cos...@cim.sld.cu> wrote: Hi all, > How can I change the thickness of hydrogen bonds in Pymol? >

Re: [PyMOL] bonding nucleic acid bases

Thank you! I can't wait to try it! > On Jul 2, 2015, at 3:05 PM, Thomas Holder > wrote: > > Hi Adam, > > The attached script will create covalent bonds for all polar contacts between > two selections. > > Example: > run > https://github.com/Pymol-Scripts/Pymol-script-repo/raw/master/get_raw

[PyMOL] Change thickness of hydrogen bonds?

Hi all, How can I change the thickness of hydrogen bonds in Pymol? Thanks --- [http://5.cim.co.cu/cim.gif] -- Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud

Re: [PyMOL] bonding nucleic acid bases

Hi Adam, The attached script will create covalent bonds for all polar contacts between two selections. Example: run https://github.com/Pymol-Scripts/Pymol-script-repo/raw/master/get_raw_distances.py run bond_hbonds.py fetch 1nz1, async=0 bond_hbonds resi 1-12, resi 12-22 Hope that helps. Che

Re: [PyMOL] test message

Thanks Thomas. > On Jul 2, 2015, at 2:46 PM, Thomas Holder > wrote: > > Hi Adam, > > Your messages have been delivered to the list, everything's all right. The > default setup is that you don't receive duplicates of your own messages (I > can change that for you if you want). > > I assume n

Re: [PyMOL] test message

Hi Adam, Your messages have been delivered to the list, everything's all right. The default setup is that you don't receive duplicates of your own messages (I can change that for you if you want). I assume nobody replied to your message "bonding nucleic acid bases" simply because nobody had wr

[PyMOL] test message

Hi Thomas, I’ve sent a few messages to the pymol users list over the last few weeks, the messages show up on the web site for the list, but they don’t come to my email inbox like the other messages that people send to the list do. Also no one has replies to any of them so I’m thinking I have a

[PyMOL] remember paths in APBS plugin on Ubuntu 14.04 - work around found

Dear all, After I encountered a problem with the temporary files, I found a work around for my original post: "remember paths in APBS plugin on Ubuntu 14.04" (I noticed that the plugin worked for me, but not for a second account on the same PC. The problem was that the temp files were written by

[PyMOL] remember paths in APBS plugin on Ubuntu 14.04

Dear all, I have installed the (latest) Pymol recently as described here: http://www.pymolwiki.org/index.php/Linux_Install After this, I installed pdb2pqr via sudo apt-get install pdb2pqr (sudo apt-get install apbsreturns that apbs is already installed, probably with pymol) The pdb2pqr.py