Thank you! I can't wait to try it! > On Jul 2, 2015, at 3:05 PM, Thomas Holder <thomas.hol...@schrodinger.com> > wrote: > > Hi Adam, > > The attached script will create covalent bonds for all polar contacts between > two selections. > > Example: > run > https://github.com/Pymol-Scripts/Pymol-script-repo/raw/master/get_raw_distances.py > run bond_hbonds.py > fetch 1nz1, async=0 > bond_hbonds resi 1-12, resi 12-22 > > Hope that helps. > > Cheers, > Thomas > > <bond_hbonds.py> > On 23 Jun 2015, at 22:51, H. Adam Steinberg <h.adam.steinb...@gmail.com> > wrote: > >> Hi all, >> >> If I create a string of double-strand DNA, or take a string of double-strand >> DNA or RNA from a structure, is there any automated way to have the bases >> link, AT, UA, GC, so when I manually sculpt or deform the DNA those bases >> would stay together? >> >> I could go through the structure and manually create physical bonds where >> the hydrogen bonds would be, and I’m guessing that would work, but I’m >> wondering if anyone has a script or is there a function that I am unaware of? >> >> Thanks! >> >> H. Adam Steinberg >> 7904 Bowman Rd >> Lodi, WI 53555 >> 608/592-2366 > > -- > Thomas Holder > PyMOL Principal Developer > Schrödinger, Inc. >
H. Adam Steinberg 7904 Bowman Rd Lodi, WI 53555 608/592-2366 ------------------------------------------------------------------------------ Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud Solutions provide you with the tools and support that you need to offload your IT needs and focus on growing your business. Configured For All Businesses. Start Your Cloud Today. https://www.gigenetcloud.com/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
