Hi,
Am 25.08.2014 21:44, schrieb Marcelo Marcet:
Thank you for taking the time to reply to this question and for
offering your help. I am also interested in quad-buffered stereo play
back.
Sorry, maybe I wasn't clear in my first mail: I don't have experience
with quad-buffered stereo playback.
Hello,
Attached is a crop of a figure create with the latest PyMOL under Windoze 7 64
bit. When setting cartoon_transparency, I get a gray band on the cartoons.
Where does this come from, and how do I get rid of it?
Thanks and Cheers
Markus
Here's my code:
# reset everything
delete all
# w
Hej,
if you simply copy-paste the wiki entry into PyMOL you will get the error.
This code is intended to be run as a block (e.g. from script) and creates
e.g. problems with indentation, or other errors.
A simple solution would be to wrap the commands to a block using "python"
and "python end".
Ei
Hi Christian,
Thank you for taking the time to reply to this question and for offering your
help. I am also interested in quad-buffered stereo play back. Would you be able
to provide us with a bit more methodology information? It sounds like you have
a script that helps you save the side-by-sid
Hi,
Many thanks for all your inputs. I was not being able to modify the cartoon
oval length, as I was in fancy helix mode. Fancy helix needs to be
unselected before to modify the oval length or width.
Thanks,
Hena
On Mon, Aug 25, 2014 at 1:32 PM, Thomas Holder <
thomas.hol...@schrodinger.com> wro
Remember this setting will only change the appearance of alpha helices. If you
are trying to change the appearance of sheets and loops you need to use their
settings.
Cheers,
Chris
--
Christopher L. Colbert, Ph.D.
Assistant Professor
Department of Chemistry and Biochemistry
North Dakota State
Oh thank you, you just made my life so much easier! I always get to work on
PyMOL sessions after people have tweaked them into oblivion...
On Aug 25, 2014, at 11:40 AM, Thomas Holder
wrote:
> Hi Hena and Adam,
>
> the shortcut to solve what Adam is describing in #2 would be:
>
> PyMOL> unse
Hi Hena and Adam,
the shortcut to solve what Adam is describing in #2 would be:
PyMOL> unset cartoon_oval_length, *
That clears the setting on all objects and falls back to using the global
setting.
Cheers,
Thomas
On 25 Aug 2014, at 12:26, H. Adam Steinberg wrote:
> 1) Go to Settings in th
Hi Xevi,
I have prepared side-by-side 3D movies that I could play on a 3D TV
using pymol and ffmpeg. I ray-traced the movie, one frame for each
eye, and used ffmpeg to compile the resulting png files to an h264
movie file. With side-by-side stereo, you of course lose resolution,
but ffmpeg can
1) Go to Settings in the menus and choose Edit all.
In the new window that appears type “oval" in the search box.
Double click the default value for cartoon_oval_length, enter your chosen
preference, and hit the enter key on your keyboard.
You should see your change.
2) If this doesn’t work, y
Hi,
I'm trying to draw arrows in Pymol 1.7.2 for mac, "à la
http://www.pymolwiki.org/index.php/Axes "
When I run the script for the Axes_with_nice_cones, I have the error
message:
File "/Applications/MacPyMOL.app/pymol/modules/pymol/parser.py", line
464, in parse
exec(layer.com2+"\n",se
Hi,
I am trying to change the cartoon oval length using the command
set cartoon_oval_length, 0.6
But, it is not showing any change. I am using pymol 1.6.0.0 in windows 8.1
Can someone help me?
Regards,
Hena
--
Slashdot TV.
Hi,
I am looking into making a quad-buffered stereo 3D movie. Is this possible
with mpeg or any other format ? I know I could just play the movie from
pymol, but would like to be able to save as mpeg with x-ray traced images
for higher quality.
Xevi
--
Xavier Fradera
---
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