Hi,
Many thanks for all your inputs. I was not being able to modify the cartoon
oval length, as I was in fancy helix mode. Fancy helix needs to be
unselected before to modify the oval length or width.
Thanks,
Hena
On Mon, Aug 25, 2014 at 1:32 PM, Thomas Holder <
thomas.hol...@schrodinger.com> wrote:
> nice! Glad you could solve it.
>
> Could you write a brief reply to the pymol-users list so that other people
> know that the issue is solved and the problem was cartoon_fancy_helices?
> Thanks!
>
> --Thomas
>
> On 25 Aug 2014, at 13:27, Hena Dutta <hdutt...@gmail.com> wrote:
>
> > Hi Thomas,
> > Thanks a lot. Problem solved. I had selected fancy helix. That was the
> reason.
> >
> > Regards,
> > Hena
> >
> >
> > On Mon, Aug 25, 2014 at 1:20 PM, Thomas Holder <
> thomas.hol...@schrodinger.com> wrote:
> > does it work if you start from scratch? Example:
> >
> > PyMOL> fetch 1ubq, async=0
> > PyMOL> as cartoon
> > PyMOL> set cartoon_oval_length, .6
> >
> > Also, make sure you are actually rendering oval helices and not fancy
> helices, see http://pymolwiki.org/index.php/Cartoon_Helix_Settings
> >
> > --Thomas
> >
> > On 25 Aug 2014, at 13:16, Hena Dutta <hdutt...@gmail.com> wrote:
> >
> > > Hi Thomas,
> > > I tried unset command and then tried #2 again. Still it did not work.
> I am sorry, there must be something wrong at my end. I just don't know what
> could be.
> > >
> > >
> > > On Mon, Aug 25, 2014 at 12:40 PM, Thomas Holder <
> thomas.hol...@schrodinger.com> wrote:
> > > Hi Hena and Adam,
> > >
> > > the shortcut to solve what Adam is describing in #2 would be:
> > >
> > > PyMOL> unset cartoon_oval_length, *
> > >
> > > That clears the setting on all objects and falls back to using the
> global setting.
> > >
> > > Cheers,
> > > Thomas
> > >
> > > On 25 Aug 2014, at 12:26, H. Adam Steinberg <
> h.adam.steinb...@gmail.com> wrote:
> > > > 1) Go to Settings in the menus and choose Edit all.
> > > >
> > > > In the new window that appears type “oval" in the search box.
> > > >
> > > > Double click the default value for cartoon_oval_length, enter your
> chosen preference, and hit the enter key on your keyboard.
> > > >
> > > > You should see your change.
> > > >
> > > > 2) If this doesn’t work, you see no change, then the selection for
> your chosen object has been directly modified by script.
> > > >
> > > > You can check this by opening a new PyMOL session and open any pdb
> file. Apply the default changes to cartoon oval length as described above
> in #1, if it works, then #2 needs to be changed.
> > > >
> > > > To change #2, choose the exact same selection that you (or someone
> else) modified in the past and set the cartoon oval length for just that
> selection… set cartoon_oval_length, 0.6, "your selection or pdb name".
> > > >
> > > > On Aug 25, 2014, at 9:57 AM, Hena Dutta <hdutt...@gmail.com> wrote:
> > > >
> > > >> Hi,
> > > >> I am trying to change the cartoon oval length using the command
> > > >> set cartoon_oval_length, 0.6
> > > >> But, it is not showing any change. I am using pymol 1.6.0.0 in
> windows 8.1
> > > >> Can someone help me?
> > > >> Regards,
> > > >> Hena
>
> --
> Thomas Holder
> PyMOL Developer
> Schrödinger, Inc.
>
>
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