[PyMOL] Embedding PyMol in a custom designed GUI

Hello all, I have recently been looking for tips or help on embedding PyMol into a GUI built upon Qt4. I looked at this post from years ago: http://sourceforge.net/mailarchive/message.php?msg_id=27413273 However on newer versions of pymol I get the same GLUT error and on the earlier version sug

Re: [PyMOL] Pymol OpenGL ES?

Hi Paul, We have plans to create the Android port, too (and have already have the core cross compiled). But, we chose not to commit to it at that time because the Android tablet space wasn't mature enough. We hope to revisit that decision soon. Cheers, -- Jason On Wed, Jul 17, 2013 at 11:13 AM,

Re: [PyMOL] Pymol OpenGL ES?

Hi Jason, I did realize there was an iPad version, but I guess I was wondering if there was perhaps something more general. For example, I'm natively running linux on a Galaxy Note 10.1, and there will likely be more linux tablets popping up. For me (and likely others now or in the future), py

Re: [PyMOL] Pymol OpenGL ES?

Hi Paul, It's been done already. See, PyMOL on the iPad (http://pymol.org/mobile). Cheers, -- Jason On Wed, Jul 17, 2013 at 10:55 AM, Paul Paukstelis wrote: > Just out of curiosity, are there any plans to port pymol over to use > OpenGL ES to bring it to more mobile devices? > > -- > Paul Pauk

[PyMOL] Pymol OpenGL ES?

Just out of curiosity, are there any plans to port pymol over to use OpenGL ES to bring it to more mobile devices? -- Paul Paukstelis, Ph.D Assistant Professor University of Maryland Chemistry & Biochemistry Dept. Center for Biomolecular Structure & Organization pauks...@umd.edu 301-405-9933 -

Re: [PyMOL] Creating coloured and transparent polyhedra

Hi Timo, I think you may have to switch to a different drawing primitive like TRIANGLES or TRIANGLE_STRIP. Since these are closed objects I assume that the enclosing area should be fillable with a color of choice. Unfortunately I have not actually had a chance to play with these primitives, so

Re: [PyMOL] Creating coloured and transparent polyhedra

Hi PyMOL users, thank you for your help. I tried to apply Carsten's suggestions using the LINE_STRIP approach. This is what I tested: from pymol.cgo import *# get constants from pymol import cmd obj = [ LINEWIDTH, 50, BEGIN, LINE_STRIP, COLOR, 255, 0, 0, VERTEX, 11.33

Re: [PyMOL] Graphically attaching particles to proteins

I'll go through them. Many thanks. On 17 Jul 2013, at 08:15, Thomas Holder wrote: > Hi, > > I don't think there is a special script for this. Your particles will > probably be represented by simple spheres or cubes, right? Did you read > Timo's question about polyhedra and Carsten's answer a

Re: [PyMOL] Reducing the surface rendering load for JSmol export

Hi Nick, did you try the "surface_quality" setting? The default value is 0. That's for molecular surfaces. PyMOL> set surface_quality, -1 The resolution of isosurfaces is determined by the resolution of the map as far as I know. You can reduce the map resolution with the "map_halve" command. Ch

Re: [PyMOL] Graphically attaching particles to proteins

Hi, I don't think there is a special script for this. Your particles will probably be represented by simple spheres or cubes, right? Did you read Timo's question about polyhedra and Carsten's answer about CGOs? http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg11645.html For spher