I'll go through them. Many thanks.
On 17 Jul 2013, at 08:15, Thomas Holder <thomas.hol...@schrodinger.com> wrote: > Hi, > > I don't think there is a special script for this. Your particles will > probably be represented by simple spheres or cubes, right? Did you read > Timo's question about polyhedra and Carsten's answer about CGOs? > > http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg11645.html > > For spheres, the easiest is to use pseudoatoms instead of CGOs: > > PyMOL> pseudoatom particle1, vdw=5.0, pos=[1.2, 3.4, 5.6] > PyMOL> as sphere, particle1 > PyMOL> zoom buffer=10 > > You can move around that atom in edit mode with Ctrl+Drag. > > Hope that helps. > > Cheers, > Thomas > > M Adanan wrote, On 07/15/13 20:06: >> Hi, >> >> I wish to graphically attach nano-sized particles to bacteriophages >> (proteins from the protein database), to visually gauge which surface >> area is covered by the nano-sized particle. Thus, wondered how to go >> about doing this, i.e. is there a script, that already does something >> along these lines? >> >> Thanks, M.A. > > -- > Thomas Holder > PyMOL Developer > Schrödinger Contractor > > ------------------------------------------------------------------------------ > See everything from the browser to the database with AppDynamics > Get end-to-end visibility with application monitoring from AppDynamics > Isolate bottlenecks and diagnose root cause in seconds. > Start your free trial of AppDynamics Pro today! > http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ See everything from the browser to the database with AppDynamics Get end-to-end visibility with application monitoring from AppDynamics Isolate bottlenecks and diagnose root cause in seconds. Start your free trial of AppDynamics Pro today! http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
