Hi, I don't think there is a special script for this. Your particles will probably be represented by simple spheres or cubes, right? Did you read Timo's question about polyhedra and Carsten's answer about CGOs?
http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg11645.html For spheres, the easiest is to use pseudoatoms instead of CGOs: PyMOL> pseudoatom particle1, vdw=5.0, pos=[1.2, 3.4, 5.6] PyMOL> as sphere, particle1 PyMOL> zoom buffer=10 You can move around that atom in edit mode with Ctrl+Drag. Hope that helps. Cheers, Thomas M Adanan wrote, On 07/15/13 20:06: > Hi, > > I wish to graphically attach nano-sized particles to bacteriophages > (proteins from the protein database), to visually gauge which surface > area is covered by the nano-sized particle. Thus, wondered how to go > about doing this, i.e. is there a script, that already does something > along these lines? > > Thanks, M.A. -- Thomas Holder PyMOL Developer Schrödinger Contractor ------------------------------------------------------------------------------ See everything from the browser to the database with AppDynamics Get end-to-end visibility with application monitoring from AppDynamics Isolate bottlenecks and diagnose root cause in seconds. Start your free trial of AppDynamics Pro today! http://pubads.g.doubleclick.net/gampad/clk?id=48808831&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
