Hi all,
I'm trying to have stereo image of ray traced objects but am running into a
problem:
If I display stereo first (cross-eye) and than ray, it renders only one
(mono) image.
If I render first and then try to stereo-on, it reverts back to unrendered
image.
??
Thanks,
n.
Ruslan Sanishvili (Nuk
Dear All,
Below is a simple script I have to make a figure. When I enter the lines
one by one the script file works. When I put the commands together in a
file and run them with the '@' command the script runs
successfully, but I don't see any evidence of its commands being carried
out - the viewp
Hi all;
I want to reduce the width of strands and helices to make better-looking
close-up figure. Does anyone know how to do that? It must be some setting
parameter but I cannot find appropriate one in my manual.
Thanks a lot in advance.
Cheom-Gil Cheong, Ph.D.
Research Associate
Department
Jianghai,
Thats correct. To get accessible surface areas for proteins you would
have to use some outside program which can generate SASA points. Using
the rTools interface for PyMOL it should be straightforward to
integrate PyMOL with your SASA program. Check out rTools for PyMOL:
http://www.
Of course I didn't try:
load dif.ccp4
isodot void, dif, 1.0
color black, void
show dots, void
until after sending the email below.
sorry,
Scott
On Tuesday, February 25, 2003, at 12:59 PM, Scott Classen wrote:
PyMolers,
Is it possible to display a map (ccp4) as dots rather than a mesh
cag
PyMolers,
Is it possible to display a map (ccp4) as dots rather than a mesh cage?
these are the commands I am using to load and disply my map:
load dif.ccp4
isomesh void, dif, 1.0
color black, void
show isomesh, void
I've tried:
load dif.ccp4
isomesh void, dif, 1.0
color black, void
sho
Hi, kaushik,
Thanks for the response. Those metheds sound good first, but
when I think about it, they are not real accessible surfaces
because these surfaces still show those small reentrant shapes
between two consecutive atoms. Is there anyway to get around
this? Or can I read any surface
Hello fellow PyMolers,
Can PyMol color a tube by main chain temperature factor? How?
Please help
Thanks,
Scott
==
Scott Classen, Ph.D.
clas...@uclink4.berkeley.edu
University of California, Berkeley
Department of Molecular & Cell Biology
237 Hi
Dear All,
I have made some selections of a molecule in its binding pocket, but I
faind the "zoom" or "orient" features bring me in either too close or too
far away, I always adjust a little with the mouse in the GUI.
What commands can I use (and put in a script) to specify the viewing angle
and d
The mappend command must come after the movie command. (Its slightly
embarassing to
admit this took a while to figure out!)
"Warren L. DeLano" wrote:
> Mike,
>
> mappend 50:color yellow,ligand
>
> You'll want to restore the color at the beginning of the movie.
>
> Cheers,
> Warren
>
> On Mon, 2
Hi Jianghai,
Some of these questions have been answered by Warren:
PyMOL doesn't show the solvent accessible surface, rather it shows the
solvent/protein contact surface. The solvent accessible surface area
is usually defined as the surface traced out by the center of a water
sphere, having
I have made a pymol movie script that I think is quite something, and may be of
use to others trying to setup movies. The movie shows the dimer of a
carbohydrate
binding protein - galectin-1. I want to know where someone could 'host' the
movie
script so that it would be easily accessible (PyMol
Hmm, forwarding this to the list too. Maybe someone else also wants to
use it...
--- Begin Message ---
Hi Mike,
You can add the following to the script movie.py from Kristian Rother.
It will give you the possibility to fade colours over a given set of
frames, as I understand you want. F
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