Dear All,
Below is a simple script I have to make a figure. When I enter the lines
one by one the script file works. When I put the commands together in a
file and run them with the '@<filename>' command the script runs
successfully, but I don't see any evidence of its commands being carried
out - the viewport doe not resize, no molecules get displayed, etc. The
following error message is present when the program exits. Does anyone
know what is going on?
Ricahrd Baxter
PyMOL: normal program termination.
Unhandled exception in thread:
Traceback (most recent call last):
File "/opt/pkgs/pymol/ext/lib/python2.1/threading.py", line 386, in
__bootstrap
_print_exc(file=s)
File "/opt/pkgs/pymol/ext/lib/python2.1/traceback.py", line 209, in
print_exc
etype, value, tb = sys.exc_info()
AttributeError: 'None' object has no attribute 'exc_info'
the script:
viewport 288,288
load rbvca.pdb, prc
hide all
@select.pml
show sticks,pocket1
show sticks,uq2
load 2fofc.map,map1,1,xplor
isomesh uq2mesh,map1,0.5,(uq2),0,1,1.76
@view.pml
color cyan,uq2mesh
color grey,(e;c)
bg_color white
viewport 900,900
ray
png image1.png
quit
