Well, that's the same problem - it's a bug in Cygwin support. The
solution is to use ./obabel --minimize. For help see ./obabel -L
minimize.
- Noel
On 17 December 2012 23:49, Ling Chan wrote:
> I see. But even if I just type "obminimize", it says the following:
>
> forcefields is not a recognize
I see. But even if I just type "obminimize", it says the following:
forcefields is not a recognized plugin type. Those with instances of
sub-types loaded are:
formats
ops
So apparently something is missing.
I do have Eigen-3.1.2. The following are the other optional packages that I
used when com
The bad news is that obenergy has been neglected (i.e. hasn't been
updated to work on Cygwin). The good news is that most of its
functionality is available through obabel:
./obabel tmp.mol -otxt --energy --append "Energy"
For help, see ./obabel -L energy. The general idea is that we are
outputing
Indeed as Noel suggested, getting PkgConfig on Cygwin solved the problem. I
did not have to uninstall the CMake for Windows.
However, after I've successfully compiled and installed openbabel-2.3.2, the
forcefields are still not working. e.g., obenergy does not work, complaining
that it "could not
> I got a cmake inside of Cygwin and another one for Windows 7 itself. ... I
> could try uninstalling the Windows CMake.
This is certainly possible. IIRC, Cygwin tries to grab commands from the
Windows path.
-Geoff--
L
results (in a few days. Busy with other things
now).
Ling
>
> From: Noel O'Boyle
>To: S.L. Chan
>Cc: "openbabel-disc...@lists.sf.net"
>Sent: Thursday, December 13, 2012 11:45 AM
>Subject: Re: [Open Babel] compiling OB-2.3.
Just updated my Cygwin, and this time finished with an error after
complaining about PkgConfig. I needed to install Cygwin's package
pkg-config.
- Noel
On 12 December 2012 21:04, Noel O'Boyle wrote:
> First of all, the only important line is the error message.
>
> Second, it works for me. I just
First of all, the only important line is the error message.
Second, it works for me. I just tried. Remember to use Cygwin's cmake
(i.e. /usr/bin/cmake). Here is the command line I used:
$ /usr/bin/cmake ../openbabel-2.3.2/ -DEIGEN3_INCLUDE_DIR=../eigen-3.1.2
On the other hand, I can't test the c
Hello folks,
I tried to compile OpenBabel-2.3.2 using Cygwin on my Windows 7
laptop. CMake could not complete the configuration process.
Here are some complaints:
conio.h - not found
sranddev - not found
Test SCANDIR_NEEDS_CONST - Failed
Test HAVE_GCC_VISIBILITY - Failed
Then ther
