PNAS reference style?

How do I get the PNAS reference style (numeric, references numbered in the order they appear in the text, compressed so 1,2,3,4 --> 1-4, etc? I have tried various .bst styles but none worked correctly. Thanks, EK

Re: LyX and editors?

st editors don't have LyX and don't have the technical chops to use LyX. So how do you interface with your editors when writing a book in LyX? Thanks SteveT Steve Litt Recession Relief Package http://www.recession-relief.US Twitter: http://www.twitter.com/stevelitt -- Ehud Kaplan, P

Re: Reducing the number of pages in an article

ion in Document Settings to specify the vertical separation of paragraphs. It's already at the smallest value.) Thanks in advance, Barak -- Ehud Kaplan, Ph.D. Jules and Doris Stein Research to Prevent Blindness Professor Director, The laboratory of Visual& Computational Neuroscience Dep

Re: Beamer multitude problems with lyx

my personal experience, necessary fonts are usually embedded in the PDFs that Beamer produces. Not so with Powerpoint. /Paul -- Ehud Kaplan, Ph.D. Jules and Doris Stein Research to Prevent Blindness Professor Director, The laboratory of Visual& Computational Neuroscience Department

Re: Beamer multitude problems with lyx

Steve, To place a logo (or any other element of a template) with vfill, hfill, etc. is way too much work, since you have to do it on every slide, dodging the other important stuff that the slide is to carry-- that is what a template is supposed to do. I'd be pretty happy with Beamer if they on

>Beamer and logo

After playing with Beamer for a while, and admiring the beautiful "slides" it can make, I am disappointed to discover that the style dictatorship that Latex enforces could become too restrictive: * Beamer allows us to place a logo on the slides, but ONLY where it wants to (not really wh

references to labels on starred sections

If I want to refer to a label attached to a starred section (or subsection, etc.), how do I do it? The pdf output comes out blank. Thanks, EK

Re: announce: template to write Ph.D. theses with LyX

a --nomath option to skip math equations? Well, this and the possibility of sending notes to the end of the document. OK, I will certainly try to add --footend to 0.43. Alex. -- Ehud Kaplan, Ph.D. Jules and Doris Stein Research to Prevent Blindness Professor Director, The labora

Problems with inserting notes and tracking changes

If I insert a /note/ into the Lyx file while Change tracking is selected (with Show changes in the output also selected) I see in the output pdf file text near the inserted note that appears to have been changed (its color is blue), even though it was not changed. To clear it I have to select

Column width vs text width in Graphics scaling

In scaling a picture, is there a difference between 85% textwidth and 85% columnwidth if the document is a one-column document? I can see none, and wonder why we have the textwidth option? EK

Problems after moving figures

After I cut and paste a figure, Lyx 1.6.5.1 (Kubuntu-64) freezes, and I have to terminate it before I can continue. It does something to the other parts of system, since I could not write this note to the list on Thunderbird-- it was frozen. It also informs me of having to change the label of t

Open Document

I wanted to export a Lyx file to a WORD file. The export menu offers HTML (WORD) or Open Document. The HTML option worked pretty well, but the output file did not quite work well with OpenOffice Writer. The Open Document option produced an empty file. Is there a convenient and robust way to go f

Predefined options

What causes a checkmark to appear in the Predefined checkbox in Document Class? I have no predefined options, as far as I can tell, and it only appears in some files but not in others. EK

For the Wish list

In working with colleagues on a paper, there are times when I do not have the figures needed for producing the entire document, but it would be nice to see it even without the figures. Is it possible to add something to the Document settings such as /Skip All Graphics/ so I could compile the d

A bug or a feature?

When I delete some text that included groups of citations, trying to Lyx the file produces errors unless I /Accept the changes. /Is this a bug or a feature?/ EK /

weird

Is something (like my newly installed SpamAssassin) eating all the Lyx list messages, or is everyone on the beach somewhere? EK

lyx test

Testing

test

This is a test. EK

Re: Natbib options in Lyx with embedded bibliography

Lyx */does/* know a lot about the citations, since when I click on one, it shows its details (and in the left column all the other citations that have been included in the Lyx file), but not the formatting options. I inserted the references into the Lyx file through the circuitous route of expor

Re: How many use Linux:

I use it on Kubuntu 9.04 and on Windows XP. I also got several (~5) people working with me to use it on Windows and a Mac. EK Luca De Marini wrote: I use it on Linux mainly and on MacOSX some times. 2009/9/11 curtis osterhoudt I also use it predominantly on Linux, but occasionally use i

> biblatex installation

, since I use the Texlive Latex. Should I move it to the /usr/share/texmf? It really would make life simpler for us peasants if there were an installation script that used some default placement of the biblatex folder and its flotilla of other programs. -- Ehud Kaplan, Ph.D. Jules and Doris Stei

Inserting a bibliography into a Lyx file

me (and others, I assume) much time and frustration. -- Ehud Kaplan, Ph.D. Director, The laboratory of Visual Neuroscience Departments of Neuroscience, Ophthalmology, Structural & Chemical Biology, The Mount Sinai School of Medicine One Gustave Levy Place NY, NY, 10029

Re: Strange indentation after REFERENCES

document, but at least now I have something that works. EK Ehud Kaplan wrote: I have a Lyx file that was exported to Latex, in order to include references (using the .bbl. file). With pdflatex it produces a perfect looking pdf file. When that Latex file is re-imported into Lyx, it produces a

Strange indentation after REFERENCES

I have a Lyx file that was exported to Latex, in order to include references (using the .bbl. file). With pdflatex it produces a perfect looking pdf file. When that Latex file is re-imported into Lyx, it produces a pdf file that is correct in every way except one: The entire bibliography (follow

Subheading numbering

Is there a way to change the way Lyx/Latex numbers subheading, so that instead of 1 Introduction it sill produce: 1. Introduction? In other words, how do I produce a period following the last digit of a subheading number? Thanks,

>sciposter layout

me to reconfigure the system again, but how do I include the layout file? Do I need to create a matching .inc file for sciposter.layout? THe manual recommends adult beverages for the creation of layout files, but I need more sober advice. Thanks, Ehud Kaplan

Sciposter example

I am looking for an example of a latex or LyX document that used the sciposter.cls document class. If anyone has such an example, please email it to me or post it here. Thanks, Ehud Kaplan

Lyx for Posters; Unavailable classes

. I re-ran Texhash from the konsole and Reconfigured Lyx, but it did not solve the problem. What am I missing? Thanks, -- Ehud Kaplan

Sectioned bibliographies

I am trying to create two bibliographies in one document. Here is what I did, but it failed: 1. I read the documentation on sectioned bibliographies (an unusual step!) 2. I made two copies of my master *.bib file, with two different names 3. I checked the "Sectioned bibliography" in

Upgrading to 1.6.2

1. In trying to upgrade from 1.6.1 under Kubuntu 8.10 64 bits I found only packages that could not be installed since it was "the wrong architecture". Is there a place where I can find Lyx 1.6.2 for 64 bits Linux? 2. When trying to import a Latex file into Lyx it gagged on th

Re: Caption width in wrapped figures

in), Lyx follows the instructions, which seem to overlap with the scale instructions on the first tab. This setting is the appearance within LyX only, therefore its name is "show in LyX" and then "Scale on screen". regards Uwe -- Ehud Kaplan, Ph.D. Jules and Doris Stein

Re: Caption width in wrapped figures

need is a way to control the separation between the graphic and the wrapping text. EK Uwe Stöhr wrote: Ehud Kaplan schrieb: Is there a way to control the width of a caption of a wrapped figure? You can insert a line break or use some special commands provided by the LaTeX package "ca

Caption width in wrapped figures

Is there a way to control the width of a caption of a wrapped figure? I think in Latex you can specify this independently of the width of the graphics in the wrppaed figure, but how do I do it in Lyx? The current Lyx leaves too much white space around the figure, because the caption is much wid

SENSELESS and Wrapfigure

Now that I have discovered the Float/figure wrap entry in the item, things will look better... ;-) -- Ehud Kaplan

Can't see integrals, sigmas, etc.

I have installed Lyx 1.6.1 on a kubuntu 64 bit (Version 8.10). It seems to work fine, and produce correct pdf output. However, some thing are not shown in the equations (in the Lyx editor): integrals, summation signs, etc. Have I neglected to install anything? I have used dpkg to install it,

Re: new line in a title

I agree with you-- I SHOULD be able to see the second line as part of the title, and I do, as my message said. The sad part is that I do NOT see the first line, the one that came BEFORE the Cntrl-Return. EK Waluyo Adi Siswanto wrote: On Fri, 2009-02-27 at 16:41 -0500, Ehud Kaplan wrote

new line in a title

When I insert a carriage return (or shift return or control return) in a /title,/ I do not see in the pdf output the portion of the title that preceded the carriage return. What do I do? Thanks -- Ehud Kaplan, Ph.D. Jules and Doris Stein Research to Prevent Blindness Professor Director, The

Re: Package manager

By the way-- if I chose to install texlive from the ISO image, do I need to uninstall the previous version? Stefano Franchi wrote: On Tuesday 24 February 2009 10:38:50 Ehud Kaplan wrote: I realize that this is not a specific Lyx question, but someone here might know the answer. My main

Package manager

anyone help? Thanks, -- Ehud Kaplan

Puzzled

compile (View-->pdflatex), returning an errors. However, if on that machine the pdf figures are replaced by their eps equivalents, all is fine. What is going on? No packages seem to be missing (there are no error messages complaining about that). Thanks -- Ehud Kaplan

Word wrapping in tables

How do I get text to wrap inside table cells so the table fits within the width of a page? Thanks,

Re: Strategies for Writing Co-operation with Non-LyX Users?

Thanks. This does not seem the most intuitive menu entry I suppose I must read the manual! James C. Sutherland wrote: On Jan 26, 2009, at 1:07 PM, Ehud Kaplan wrote: Thanks, Jurgen. Your comments were helpful. As for the inserted comments (item #4), sometimes one needs to insert

Re: Strategies for Writing Co-operation with Non-LyX Users?

-- it is simply hard to see where the notes are, or what is their contents. Could you elaborate a bit? Jürgen -- Ehud Kaplan, Ph.D. Jules and Doris Stein Research to Prevent Blindness Professor Director, The laboratory of Visual Neuroscience Departments of Neuroscience, Op

Re: Strategies for Writing Co-operation with Non-LyX Users?

My own problems with using Lyx for a committee-composed documents are much more prosaic: 1. It is difficult to tell which is newly inserted text vs deleted text-- it is all blue on my screen 2. There is no tracking of who changed what, as is nicely done in MS WORD 3. There are no keyb

Re: Numbered equations placement

the pdflatex, the equation was placed correctly (all on one line). Like God, Lyx moves in mysterious ways. However, since the problem went away, all is well, at least Lyxwise. EK rgheck wrote: Ehud Kaplan wrote: I have a numbered equation that Lyx insists on indenting, and as a result

Re: Numbering appendices

ou did You continue using the Section, subsection, subsubsection system, but now you should start getting something like A A.1 A.1.1 B B.1 and so on. Erez On Fri, Jan 16, 2009 at 7:36 PM, Ehud Kaplan <mailto:ehud.kap...@mssm.edu>> wrote: I did not notice the Start Appendix Here co

formatting numbered equations

/"When all else fails, read the manual"--/ So I did, and found how to prevent Lyx from centering numbered equations: use the fleqn option in the Document Class under Settings. This left-justifies the equations, which is not really what I wanted, but it prevents the breaking up of the equation tha

Numbered equations placement

I have a numbered equation that Lyx insists on indenting, and as a result it spills over to the next line. There is PLENTY of white space on the left of the equation to accommodate the full equation. Is there a way to force it to do the right thing and keep the entire equation on one line?

Re: Numbering appendices

As it is, I do not see what the Start Appendix Here does for me. Bob Lounsbury wrote: On Thu, Jan 15, 2009 at 12:47 PM, Ehud Kaplan wrote: How do I number appendices? Lyx numbers them as SECTIONS, and numbers APPENDIX 1 as Section N+!, where N is the number of the last section (

Numbering appendices

How do I number appendices? Lyx numbers them as SECTIONS, and numbers APPENDIX 1 as Section N+!, where N is the number of the last section (before the appendices start). I would like to be able to refer to the appendices by their numbers in the body of the article (as in: "In Appendix 3 we give

Fonts in fancyhdr

Adrian, Here is how you control the font size in the header/footer using fancyhdr. Note that you can do that for each portion of the header or footer independently. Hope this helps-- E. Kaplan == \usepackage{fancyhdr} \pagestyle{fancy} \lhead{\scriptsize \textsf{P

changebars: 7A2-99B

Pete Phillips <[EMAIL PROTECTED]> schrieb: > We use the Change control ability to print out versions where we can see > what we have changed since the last edition. > Previously, as well as showing the changes in a different colour, > changebars came out in the margins. Recently (not sure w

Changebars

Pete Phillips <[EMAIL PROTECTED]> schrieb: > We use the Change control ability to print out versions where we can see > what we have changed since the last edition. > Previously, as well as showing the changes in a different colour, > changebars came out in the margins. Recently (not sure

MPM

I often need a Latex package that is missing from my installation. WinEdt in Windows gets them automatically, but Lyx does not. I trying to get MPM (the MikTex package manager), but the Ubuntu guide to getting it points to an empty url. Where can I get mpm? Thanks,

Package management

1. How do I manage packages in Lyx? 2. My TexLive installation (on Kubuntu 8.04) does not seem to have installed tlmgr. Can anyone tell me how to install that? Thanks EK

Re: Location of packages

This is where I had put it, but somehow sudo texhash did not update the database enough for Lyx (actually, Latex) to make use of it. However, I solved it by installing xcolor from the Ubuntu repositories. EK Les Denham wrote: On Wednesday 24 September 2008 09:18:05 am rgheck wrote: E. Kap

Location of packages

I am trying to Lyx a file, but I am getting the error: *Latex error: File 'xcolor.sty' not found.* I have placed the xcolor.sty file in a folder a folder called xcolor in /usr/share/texmf-texlive/tex/latex/xcolor I ran texconfigure and texhash. I am running Kubuntu 8.04 with tex-live How d