Re: [PATCHES] Add totem

l...@gnu.org (Ludovic Courtès) writes: >> From ba786fa3d1d7896336dca3b364bb630142c30fa1 Mon Sep 17 00:00:00 2001 >> From: Mark H Weaver >> Date: Sat, 20 Jun 2015 21:09:54 -0400 >> Subject: [PATCH 2/3] gnu: Add grilo-plugins. >> >> * gnu/packages/gnome.scm (grilo-plugins): New variable. > > [...]

How to handle required plugins and dbus services for GNOME Programs?

l...@gnu.org (Ludovic Courtès) writes: > Mark H Weaver skribis: > >> A few caveats: in order for totem to work properly, you must have >> several other packages installed in your profile. I'm not entirely sure >> of the full set needed, but I guess it includes: >> >> grilo >> grilo-plugins >

Re: [PATCH] Add yaggo.

On Wed, Jun 24, 2015 at 02:35:03PM +1000, Ben Woodcroft wrote: > Actually, I lie, this patch only sort of works. The issue is that it > only works when a ruby package is also installed, GEM_PATH does not > get set as part of the ruby-build-system for yaggo. The lib/ files > are copied to what I gat

[PATCH] Add seqtk.

I feel somewhat honoured to even be mentioned in the same thread as kseq.h >From 48d3adae4bcada110df3fb7d8c5ddc55ad2000ff Mon Sep 17 00:00:00 2001 From: Ben Woodcroft Date: Wed, 24 Jun 2015 15:04:48 +1000 Subject: [PATCH] gnu: Add seqtk. * gnu/packages/bioinformatics.scm (seqtk): New variable. -

Re: [PATCH] gnu: Add hmmer

Ben Woodcroft writes: > Attached, seems all good now. Pushed, thanks! Mark

[PATCH] Add yaggo.

Actually, I lie, this patch only sort of works. The issue is that it only works when a ruby package is also installed, GEM_PATH does not get set as part of the ruby-build-system for yaggo. The lib/ files are copied to what I gather is the correct place, but the env isn't right. The same also a

Re: [PATCH] gnu: Add hmmer

On 24/06/15 11:48, Ben Woodcroft wrote: On 24/06/15 11:37, Ben Woodcroft wrote: Thanks Mark, that's the only change in the attached patch, except that "license:" is added too. Actually I didn't, I'll send an updated patch soon after testing. Attached, seems all good now. Apologies for sendi

Re: [PATCH] gnu: Add hmmer

On 24/06/15 11:37, Ben Woodcroft wrote: Thanks Mark, that's the only change in the attached patch, except that "license:" is added too. Actually I didn't, I'll send an updated patch soon after testing.

Re: [PATCH] gnu: Add hmmer

Thanks Mark, that's the only change in the attached patch, except that "license:" is added too. On 22/06/15 04:23, Ricardo Wurmus wrote: Pjotr Prins writes: It is quite common in bioinformatics tools to include foreign code. One reason in favour of including the original setup that is it is

Re: [PATCH] import: pypi: Detect inputs.

On 06/18/2015 12:45 PM, Amirouche Boubekki wrote: > Héllo, > Hey, > > If I'm not mistaken this patch relies only on the presence of > requirements.txt. This is not a required file in python packaging. > otherwise said, we miss a lot using this method. I think the best way to > do that would

Re: [PATCH] gnu/package/pv.scm (pv): New file, new variable

On Tue, Jun 23, 2015 at 1:43 PM, Alex Kost wrote: > Claes Wallin (韋嘉誠) (2015-06-19 21:51 +0300) wrote: > I think there is no need in this ↑ line. The commit message should be: > > --8<---cut here---start->8--- > gnu: Add pv. > > * gnu/package/pv.scm (pv): New

[PATCH] Add sfarklib & sfarkxtc

>From bac01c1b64ed14fc1c26f35961f1c8fd29caabcb Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Jun 2015 21:25:19 +0200 Subject: [PATCH 1/2] gnu: Add sfarklib. * gnu/packages/compression.scm (sfarklib): New variable. --- gnu/packages/compression.scm | 37 ++

Re: [PATCH] Add setBfree.

Ludovic Courtès writes: >> +(propagated-inputs `(("freetype" ,freetype))) > > Please explain the reason (Requires.private) in a comment above. Oh, right. >> From 0110a38d7c1fcf47ffc5691f97966addd379f50c Mon Sep 17 00:00:00 2001 >> From: Ricardo Wurmus >> Date: Thu, 18 Jun 2015 17:37:47 +0

Re: Linux-libre 4.1

"Jason Self" writes: > Hello, just wanted to let you know I've made up some kernel > configuration files for 4.1. Just in case you want to use them. > > https://jxself.org/git/?p=kernel-configs.git Already done: http://git.savannah.gnu.org/cgit/guix.git/commit/?id=f3457e7001c44b4455d80c6d44ec92a

Linux-libre 4.1

Hello, just wanted to let you know I've made up some kernel configuration files for 4.1. Just in case you want to use them. https://jxself.org/git/?p=kernel-configs.git signature.asc Description: PGP signature

Re: Third party guix repositories could be used for housing guile modules and other things.

Hello, You seem to be confusing Guile and Guix. Guix only works on GNU/Linux, and GuixSD is only a GNU/Linux distribution now. See . Guix users can have their own package repository. The various tools will be able to use them as long as the ‘GUIX_PACKAGE_PATH’ environmen

Re: [PATCH] Fixes for MISO.

Ludovic Courtès writes: > Don’t hesitate to push non-controversial changes like these after a > couple of days have passed. Thank you, I'll do that. ~~ Ricardo

Re: [PATCH] Add setBfree.

Ricardo Wurmus skribis: > From 00bd892e00e2f8d1261f4fffaf2a9ba31d5961e8 Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Thu, 18 Jun 2015 17:36:12 +0200 > Subject: [PATCH 1/2] gnu: ftgl: Propagate "freetype". > > * gnu/packages/gl.scm (ftgl)[inputs,propagated-inputs]: Move "freetype" from

Re: [PATCH] Fixes for MISO.

Ricardo Wurmus skribis: > From b8c6ece9d658969a0ce8054e368df96ce293c30f Mon Sep 17 00:00:00 2001 > From: Ricardo Wurmus > Date: Wed, 17 Jun 2015 12:14:39 +0200 > Subject: [PATCH 1/2] gnu: miso: Install executables. > > * gnu/packages/bioinformatics.scm (miso)[source]: Patch "setup.py" to use >

Re: emacs packages

Federico Beffa skribis: > I'm just saying: If we use separate directories as package.el does, we > avoid all name clashes with probability 1. If we use a flat structure > such a claim can not be done. > > Even if the clash "only" happens with, say, a README file, the state > of the system (user p

Re: Stepping through Guix code (REPL)

Pjotr Prins skribis: > Q1: > > > https://www.gnu.org/software/guile/manual/html_node/Single-Stepping-through-a-Procedure_0027s-Code.html#Single-Stepping-through-a-Procedure_0027s-Code This is a stale page from the Guile 1.8 manual; I’ve removed it now. See

Re: [PATCH 3/5] build: Add 'emacs-build-system'

Federico Beffa (2015-06-22 22:33 +0300) wrote: > On Mon, Jun 22, 2015 at 7:59 PM, Alex Kost wrote: > >> Well, these trailing spaces are artifacts of (inaccurate) coding. Emacs >> can't read user's mind to decide if the spaces are redundant or >> intended. > > No need to read the mind... you just

Re: [PATCH] gnu/package/pv.scm (pv): New file, new variable

Claes Wallin (韋嘉誠) (2015-06-19 21:51 +0300) wrote: > From 9213e7207f5e72bf66460d2cdf4e27a86609e322 Mon Sep 17 00:00:00 2001 > From: Claes Wallin > Date: Fri, 19 Jun 2015 20:12:09 +0200 > Subject: [PATCH] gnu/package/pv.scm (pv): New file, new variable > > Signed-off-by: Claes Wallin I think the

Stepping through Guix code (REPL)

I am looking for a way to step through Guix code using Guile REPL. Q1: https://www.gnu.org/software/guile/manual/html_node/Single-Stepping-through-a-Procedure_0027s-Code.html#Single-Stepping-through-a-Procedure_0027s-Code I get While compiling expression: ERROR: no code for module (ice

[PATCH] Add fastlmm & pysnptools.

>From b88c44394c1a6e2e9a5932ac2a3a9b431408c742 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Fri, 12 Jun 2015 15:46:40 +0200 Subject: [PATCH 1/2] gnu: Add python2-pysnptools. * gnu/packages/python.scm (python2-pysnptools): New variable. --- gnu/packages/python.scm | 30

[PATCH] Add preseq.

>From 7e0352fad776f1c491882647ee3ad5f5319e1164 Mon Sep 17 00:00:00 2001 From: Ricardo Wurmus Date: Tue, 23 Jun 2015 10:54:00 +0200 Subject: [PATCH] gnu: Add preseq. * gnu/packages/bioinformatics.scm (preseq): New variable. --- gnu/packages/bioinformatics.scm | 51

Re: [PATCH] Add Blast+.

Hi Mark, thank you for the review! >> + `(;; There are three(!) tests for this massive library, and all fail >> with >> + ;; "unparsable timing stats". >> + ;; ERR [127] -- [util/regexp] test_pcre.sh (unparsable timing >> stats) >> + ;; ERR [127] -- [serial/datatool]