On 24/06/15 11:48, Ben Woodcroft wrote:
On 24/06/15 11:37, Ben Woodcroft wrote:
Thanks Mark, that's the only change in the attached patch, except
that "license:" is added too.
Actually I didn't, I'll send an updated patch soon after testing.
Attached, seems all good now. Apologies for sending too many mails about
this.
>From 936ad4f76bbb3825ab5c1623285756cf45f8d192 Mon Sep 17 00:00:00 2001
From: Ben Woodcroft <donttrust...@gmail.com>
Date: Wed, 24 Jun 2015 11:51:05 +1000
Subject: [PATCH] gnu: Add hmmer.
* gnu/packages/bioinformatics.scm (hmmer): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8dfaff3..c88c3ab 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1032,6 +1032,35 @@ several alignment strategies enable effective alignment of RNA-seq reads, in
particular, reads spanning multiple exons.")
(license license:gpl3+)))
+(define-public hmmer
+ (package
+ (name "hmmer")
+ (version "3.1b2")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append
+ "http://selab.janelia.org/software/hmmer";
+ (version-prefix version 1) "/"
+ version "/hmmer-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx"))))
+ (build-system gnu-build-system)
+ (native-inputs `(("perl", perl)))
+ (home-page "http://hmmer.janelia.org";)
+ (synopsis "Biosequence analysis using profile hidden Markov models")
+ (description
+ "HMMER is used for searching sequence databases for homologs of protein
+sequences, and for making protein sequence alignments. It implements methods
+using probabilistic models called profile hidden Markov models (profile
+HMMs).")
+ (license (list license:gpl3+
+ ;; The bundled library 'easel' is distributed
+ ;; under The Janelia Farm Software License.
+ (license:non-copyleft
+ "file://easel/LICENSE"
+ "See easel/LICENSE in the distribution.")))))
+
(define-public htseq
(package
(name "htseq")
--
2.1.4
