My current Gromacs version is 4.5.5
I think using the first option will be easy and quick.
On Wed, Jun 12, 2013 at 4:41 PM, Erik Marklund wrote:
> You have (at least) two easy options.
>
> 1) Install old_dssp that is available through the dssp web page.
> 2) Install a newer version of gromacs t
You have (at least) two easy options.
1) Install old_dssp that is available through the dssp web page.
2) Install a newer version of gromacs than you have at the moment. What version
do you currently use?
Erik
On 12 Jun 2013, at 12:56, Nikunj Maheshwari wrote:
> Yes I checked. do_dssp has n
Yes I checked. do_dssp has no -ver option.
I also found out this link
https://gerrit.gromacs.org/#/c/687/
but dont know how to install/use it.
Or maybe I can install DsspOld and see?
On Wed, Jun 12, 2013 at 4:15 PM, Erik Marklund wrote:
> Search again. The syntax for invoking dssp changed a
Search again. The syntax for invoking dssp changed at some point and it took a
while before do_dssp adapted to that. If your do_dssp is lacking the -ver
option then I'm quite confident that it uses the old syntax, which doesn't work
with the newer versions (v. 2.0+ I think) of dssp.
Erik
On 1
The location of dssp is /usr/local/bin/dssp
On Wed, Jun 12, 2013 at 3:43 PM, Mark Abraham wrote:
> Right. And what is its location?
> On Jun 12, 2013 11:17 AM, "Nikunj Maheshwari"
> wrote:
>
> > Yes I did searched. But for most people, there were issues regarding the
> > path or wrong DSSP.
> >
Right. And what is its location?
On Jun 12, 2013 11:17 AM, "Nikunj Maheshwari"
wrote:
> Yes I did searched. But for most people, there were issues regarding the
> path or wrong DSSP.
> DSSP runs for me, but do_dssp does not.
>
>
> On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund
> wrote:
>
> > Hi,
Yes I did searched. But for most people, there were issues regarding the
path or wrong DSSP.
DSSP runs for me, but do_dssp does not.
On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund wrote:
> Hi,
>
> Search the mailing list. This problem and its solution has been repeatedly
> discussed.
>
> Erik
>
Hi,
Search the mailing list. This problem and its solution has been repeatedly
discussed.
Erik
On 12 Jun 2013, at 10:31, Nikunj Maheshwari wrote:
> Dear all,
>
> I installed dssp (Version 2.0.4) and it works perfect on a .pdb file.
> I am trying to use it for do_dssp command but get the foll
Dear all,
I installed dssp (Version 2.0.4) and it works perfect on a .pdb file.
I am trying to use it for do_dssp command but get the following error each
time:
"Fatal error:
Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 >
/dev/null 2> /dev/null
"
Is there any way to recti
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