My current Gromacs version is 4.5.5 I think using the first option will be easy and quick.
On Wed, Jun 12, 2013 at 4:41 PM, Erik Marklund <er...@xray.bmc.uu.se> wrote: > You have (at least) two easy options. > > 1) Install old_dssp that is available through the dssp web page. > 2) Install a newer version of gromacs than you have at the moment. What > version do you currently use? > > Erik > > On 12 Jun 2013, at 12:56, Nikunj Maheshwari <nixcrazyfor...@gmail.com> > wrote: > > > Yes I checked. do_dssp has no -ver option. > > I also found out this link > > > > https://gerrit.gromacs.org/#/c/687/ > > > > but dont know how to install/use it. > > > > Or maybe I can install DsspOld and see? > > > > > > > > On Wed, Jun 12, 2013 at 4:15 PM, Erik Marklund <er...@xray.bmc.uu.se> > wrote: > > > >> Search again. The syntax for invoking dssp changed at some point and it > >> took a while before do_dssp adapted to that. If your do_dssp is lacking > the > >> -ver option then I'm quite confident that it uses the old syntax, which > >> doesn't work with the newer versions (v. 2.0+ I think) of dssp. > >> > >> Erik > >> > >> On 12 Jun 2013, at 11:17, Nikunj Maheshwari <nixcrazyfor...@gmail.com> > >> wrote: > >> > >>> Yes I did searched. But for most people, there were issues regarding > the > >>> path or wrong DSSP. > >>> DSSP runs for me, but do_dssp does not. > >>> > >>> > >>> On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund <er...@xray.bmc.uu.se> > >> wrote: > >>> > >>>> Hi, > >>>> > >>>> Search the mailing list. This problem and its solution has been > >> repeatedly > >>>> discussed. > >>>> > >>>> Erik > >>>> > >>>> On 12 Jun 2013, at 10:31, Nikunj Maheshwari <nixcrazyfor...@gmail.com > > > >>>> wrote: > >>>> > >>>>> Dear all, > >>>>> > >>>>> I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. > >>>>> I am trying to use it for do_dssp command but get the following error > >>>> each > >>>>> time: > >>>>> > >>>>> "Fatal error: > >>>>> Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > > > >>>>> /dev/null 2> /dev/null > >>>>> " > >>>>> > >>>>> Is there any way to rectify it? > >>>>> > >>>>> Thanks. > >>>>> Nikunj > >>>>> -- > >>>>> gmx-users mailing list gmx-users@gromacs.org > >>>>> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>>>> * Please search the archive at > >>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>>>> * Please don't post (un)subscribe requests to the list. Use the > >>>>> www interface or send it to gmx-users-requ...@gromacs.org. > >>>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >>>> > >>>> -- > >>>> gmx-users mailing list gmx-users@gromacs.org > >>>> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>>> * Please search the archive at > >>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>>> * Please don't post (un)subscribe requests to the list. Use the > >>>> www interface or send it to gmx-users-requ...@gromacs.org. > >>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >>>> > >>> -- > >>> gmx-users mailing list gmx-users@gromacs.org > >>> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>> * Please don't post (un)subscribe requests to the list. Use the > >>> www interface or send it to gmx-users-requ...@gromacs.org. > >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> -- > >> gmx-users mailing list gmx-users@gromacs.org > >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >> * Please search the archive at > >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >> * Please don't post (un)subscribe requests to the list. Use the > >> www interface or send it to gmx-users-requ...@gromacs.org. > >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > * Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
