You have (at least) two easy options. 1) Install old_dssp that is available through the dssp web page. 2) Install a newer version of gromacs than you have at the moment. What version do you currently use?
Erik On 12 Jun 2013, at 12:56, Nikunj Maheshwari <nixcrazyfor...@gmail.com> wrote: > Yes I checked. do_dssp has no -ver option. > I also found out this link > > https://gerrit.gromacs.org/#/c/687/ > > but dont know how to install/use it. > > Or maybe I can install DsspOld and see? > > > > On Wed, Jun 12, 2013 at 4:15 PM, Erik Marklund <er...@xray.bmc.uu.se> wrote: > >> Search again. The syntax for invoking dssp changed at some point and it >> took a while before do_dssp adapted to that. If your do_dssp is lacking the >> -ver option then I'm quite confident that it uses the old syntax, which >> doesn't work with the newer versions (v. 2.0+ I think) of dssp. >> >> Erik >> >> On 12 Jun 2013, at 11:17, Nikunj Maheshwari <nixcrazyfor...@gmail.com> >> wrote: >> >>> Yes I did searched. But for most people, there were issues regarding the >>> path or wrong DSSP. >>> DSSP runs for me, but do_dssp does not. >>> >>> >>> On Wed, Jun 12, 2013 at 2:25 PM, Erik Marklund <er...@xray.bmc.uu.se> >> wrote: >>> >>>> Hi, >>>> >>>> Search the mailing list. This problem and its solution has been >> repeatedly >>>> discussed. >>>> >>>> Erik >>>> >>>> On 12 Jun 2013, at 10:31, Nikunj Maheshwari <nixcrazyfor...@gmail.com> >>>> wrote: >>>> >>>>> Dear all, >>>>> >>>>> I installed dssp (Version 2.0.4) and it works perfect on a .pdb file. >>>>> I am trying to use it for do_dssp command but get the following error >>>> each >>>>> time: >>>>> >>>>> "Fatal error: >>>>> Failed to execute command: /usr/local/bin/dssp -na ddtmi68v ddwLuK68 > >>>>> /dev/null 2> /dev/null >>>>> " >>>>> >>>>> Is there any way to rectify it? >>>>> >>>>> Thanks. >>>>> Nikunj >>>>> -- >>>>> gmx-users mailing list gmx-users@gromacs.org >>>>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>>>> * Please search the archive at >>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>>>> * Please don't post (un)subscribe requests to the list. Use the >>>>> www interface or send it to gmx-users-requ...@gromacs.org. >>>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>>> >>>> -- >>>> gmx-users mailing list gmx-users@gromacs.org >>>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>>> * Please search the archive at >>>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>>> * Please don't post (un)subscribe requests to the list. Use the >>>> www interface or send it to gmx-users-requ...@gromacs.org. >>>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>>> >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> * Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to gmx-users-requ...@gromacs.org. >>> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> >> -- >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> * Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> * Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > * Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > * Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
