Re: [gmx-users] Bilayer thickness error

2013-10-18 Thread Archana Sonawani-Jagtap
thank you so much. It was such a stupid error from my side. On Fri, Oct 18, 2013 at 5:08 PM, Justin Lemkul wrote: > > > On 10/18/13 2:54 AM, Archana Sonawani-Jagtap wrote: > >> Hi, >> This is my input file for calculating bilayer thickness in absence of >> peptide: >> ## Input file and inpu

Re: [gmx-users] Bilayer thickness error

2013-10-18 Thread Justin Lemkul
On 10/18/13 2:54 AM, Archana Sonawani-Jagtap wrote: Hi, This is my input file for calculating bilayer thickness in absence of peptide: ## Input file and input file parameters coord_file md.gro file_type gro num_frames 1 num_lipid_types1 res

[gmx-users] Bilayer thickness error

2013-10-17 Thread Archana Sonawani-Jagtap
Hi, This is my input file for calculating bilayer thickness in absence of peptide: ## Input file and input file parameters coord_file md.gro file_type gro num_frames 1 num_lipid_types1 resname1POPC atomname1 P8 sol

Re: [gmx-users] Bilayer thickness

2013-10-07 Thread Justin Lemkul
On 10/7/13 8:00 AM, Archana Sonawani-Jagtap wrote: Hi, I have used Grid-Mat program for calculating bilayer thickness and area per lipid for POPC bilayer. For bilayer thickness, without peptide, it provides the lateral area of system in angstrom sq. and also APL. (keeping APL as no) I separa

[gmx-users] Bilayer thickness

2013-10-07 Thread Archana Sonawani-Jagtap
Hi, I have used Grid-Mat program for calculating bilayer thickness and area per lipid for POPC bilayer. For bilayer thickness, without peptide, it provides the lateral area of system in angstrom sq. and also APL. (keeping APL as no) I separately calculated the APL with peptide, It also provides