Hi, This is my input file for calculating bilayer thickness in absence of peptide: ###### Input file and input file parameters coord_file md.gro file_type gro num_frames 1 num_lipid_types 1 resname1 POPC atomname1 P8 solvent SOL ions CL- ###### Define the size and shape of the grid box_size solvent grid 20 conserve_ratio yes ###### Define whether there is a protein embedded in the bilayer protein no precision 1.3 P_value 5.0 ###### Define the desired output files and format output_prefix output output_format column thickness yes area no
I got 400 lines in one column in output file for average thickness (calculated without peptide) When running in Gnuplot I get following error: splot 'output.frame1.20x20.average_thickness.dat' matrix using (1+$1):(1+$2):3 Warning: empty x range [1:1], adjusting to [0.99:1.01] Please help me. -- Archana Sonawani-Jagtap Senior Research Fellow, Biomedical Informatics Centre, NIRRH (ICMR), Parel Mumbai, India. 9960791339 -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
