Hi, I have used Grid-Mat program for calculating bilayer thickness and area per lipid for POPC bilayer.
For bilayer thickness, without peptide, it provides the lateral area of system in angstrom sq. and also APL. (keeping APL as no) I separately calculated the APL with peptide, It also provides the lateral area of system and APL.(keeping thickness as no) which lateral area has to be considered as the thickness of the bilayer in terms of nm? both have different values. I am confused. which values should be reported for thickness and APL? Please help me. -- Archana Sonawani-Jagtap Senior Research Fellow, Biomedical Informatics Centre, NIRRH (ICMR), Parel Mumbai, India. 9960791339 -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users * Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! * Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. * Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
