Re: [gmx-users] 2 beginner?s questions

Message: 6 Date: Tue, 16 May 2006 23:02:15 +1000 From: Mark Abraham <[EMAIL PROTECTED]> Subject: Re: [gmx-users] 2 beginner?s questions To: Discussion list for GROMACS users Message-ID: <[EMAIL PROTECTED]> Content-Type: text/plain; charset=ISO-8859-1; format=flowed Sampo Karkola

Re: [gmx-users] 2 beginner´s questions

Oops, my bad. Sampo Check out these cool words by Mark Abraham: Sampo Karkola wrote: Hi, also VMD is quite handy. You'll need pdb's for VMD, too. Not true. VMD eats at least .gro, .g96, .trr and .xtc as well as .pdb and a whole pile of others. Mark ___

Re: [gmx-users] 2 beginner´s questions

Sampo Karkola wrote: Hi, also VMD is quite handy. You'll need pdb's for VMD, too. Not true. VMD eats at least .gro, .g96, .trr and .xtc as well as .pdb and a whole pile of others. Mark ___ gmx-users mailing listgmx-users@gromacs.org http://www

Re: [gmx-users] 2 beginner´s questions

-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi, I like a lot "chimera" (http://www.cgl.ucsf.edu/chimera/) It doesn't currently support gromacs trajectories, but it does support trajectories exported to single or multiple pdb files. It's incredibly easy to learn and use. You can depict your mole

Re: [gmx-users] 2 beginner´s questions

Hi, also VMD is quite handy. You'll need pdb's for VMD, too. Check out these cool words by Gale, Ella: You can also use pymol. To use it you have to convert your trajectory to a .pdb using trjconv, but pymol is quite easy to use. > I am just starting my first dynamics and wonder if you could

RE: [gmx-users] 2 beginner´s questions

Title: RE: [gmx-users] 2 beginner´s questions You can also use pymol. To use it you have to convert your trajectory to a .pdb using trjconv, but pymol is quite easy to use. > I am just starting my first dynamics and wonder if you could help me with: > 1. Want to use some graphical p

Re: [gmx-users] 2 beginner´s questions

Quoting [EMAIL PROTECTED]: Dear Gromacs community. I am just starting my first dynamics and wonder if you could help me with: 1. Want to use some graphical program to see the atoms moving. Can I use ngmx? What other programs are available? You can use VMD, also. 2. This is the near the end

[gmx-users] 2 beginner´s questions

Dear Gromacs community. I am just starting my first dynamics and wonder if you could help me with: 1. Want to use some graphical program to see the atoms moving. Can I use ngmx? What other programs are available? 2. This is the near the end of my .top file in the final MD step: #ifdef POSRES