-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Hi,
I like a lot "chimera" (http://www.cgl.ucsf.edu/chimera/) It doesn't currently support gromacs trajectories, but it does support trajectories exported to single or multiple pdb files. It's incredibly easy to learn and use. You can depict your molecules in different styles, analyze them, analyze some aspects of the trajectory and also makes movies in several formats. Good luck! Miguel Sampo Karkola wrote: > Hi, > > also VMD is quite handy. You'll need pdb's for VMD, too. > > Check out these cool words by Gale, Ella: > >> You can also use pymol. To use it you have to convert your trajectory >> to a .pdb using trjconv, but pymol is quite easy to use. >> >> > I am just starting my first dynamics and wonder if you could help >> me with: >> >> > 1. Want to use some graphical program to see the atoms moving. Can >> I use >> > ngmx? What other programs are available? >> >> >> ------------------------------------------------------------------------ >> >> _______________________________________________ >> gmx-users mailing list gmx-users@gromacs.org >> http://www.gromacs.org/mailman/listinfo/gmx-users >> Please don't post (un)subscribe requests to the list. Use the www >> interface or send it to [EMAIL PROTECTED] >> Can't post? Read http://www.gromacs.org/mailing_lists/users.php > > _______________________________________________ > gmx-users mailing list gmx-users@gromacs.org > http://www.gromacs.org/mailman/listinfo/gmx-users > Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [EMAIL PROTECTED] > Can't post? Read http://www.gromacs.org/mailing_lists/users.php > - -- Miguel Ortiz Lombardía Centro de Investigaciones Oncológicas C/ Melchor Fernández Almagro, 3 28029 Madrid, Spain Tel. +34 912 246 900 Fax. +34 912 246 976 email: [EMAIL PROTECTED] www: http://www.ysbl.york.ac.uk/~mol/ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Je suis de la mauvaise herbe, Braves gens, braves gens, Je pousse en liberté Dans les jardins mal fréquentés! Georges Brassens -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.1 (GNU/Linux) iD8DBQFEabSlF6oOrDvhbQIRAtlgAJ4+Z7NaInraPt1j6ToKYDplfl3qugCgjcRx iHHQet45nX7Qj9C0FKPlD74= =RivW -----END PGP SIGNATURE----- _______________________________________________ gmx-users mailing list gmx-users@gromacs.org http://www.gromacs.org/mailman/listinfo/gmx-users Please don't post (un)subscribe requests to the list. Use the www interface or send it to [EMAIL PROTECTED] Can't post? Read http://www.gromacs.org/mailing_lists/users.php
