Re: [Freesurfer] URGENT: Error in analyse

2014-05-27 Thread Saloni
ote: > > > Does it print out anything else? An alternative is to use the command > line stream (create your own fsgd file, run mris_preproc, smooth, > mri_glmfit, mri_glmfit-sim) > doug > > > > >> On 05/27/2014 06:38 AM, Saloni Sharma wrote: >> I a

[Freesurfer] URGENT: Error in analyse

2014-05-26 Thread Saloni Sharma
can do to fix it. I would appreciate a quick response as my thesis submission is due in two weeks and I cannot proceed until this problem is sorted. Thanks and regards, Saloni ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard

Re: [Freesurfer] URGENT: Error in analyse

2014-05-26 Thread Saloni Sharma
-disk4/IMAGEN/Saloni_data/freesurfer_output/ and yes I have run recon-all-qcache on all my subjects. Saloni On 26 May 2014 16:58, Bruce Fischl wrote: > Hi Saloni > > Does that directory exist? What is your SUBJECTS_DIR set to? And have you > run recon-all -qcache on all y

Re: [Freesurfer] URGENT: Error in analyse

2014-05-26 Thread Saloni Sharma
Doug or Nick to reply, but you might > send your qdec file and the group.levels files > > sorry > Bruce > > On Mon, 26 May 2014, Saloni Sharma wrote: > > > Hey Bruce, > > > > Yes, that directory exists, as I said if I only choose groups(high stress > > and lo

Re: [Freesurfer] URGENT: Error in analyse

2014-05-29 Thread Saloni Sharma
Yes! It worked! Thank you so much for all your help! Best Regards, Saloni On 28 May 2014 23:31, Douglas N Greve wrote: > > Daniel found your problem as he mentioned in his previous email (see > below). Change the qdec table to have the name of the subject be > 54987500_output.

[Freesurfer] Orthogonalising covariates

2014-06-01 Thread Saloni Sharma
Dear Freesurfers, does qdec allows you to orthogonalise one covariate relative to the other? Regards, Saloni ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in