[Freesurfer] Error with recon-all: You are trying to re-run an existing subject with (possibly) new input data (-i).

n existing subject, then omit all -i flags. I have tried all the suggestions listed in the error information, but none worked. Does anyone have any suggestion? I would really appreciated it. Many Thanks Peng -------- Peng Liu, PhD Candidate Institut für

Re: [Freesurfer] Error with recon-all: You are trying to re-run an existing subject with (possibly) new input data (-i).

Peng Liu, PhD Candidate Institut für Kognitive Neurologie und Demenzforschung (IKND) Otto-von-Guericke Universität Magdeburg Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE) Leipziger Str. 44| Haus 64| Raum 217 39120 Magdeburg, Deutschland Email

Re: [Freesurfer] Error with recon-all: You are trying to re-run an existing subject with (possibly) new input data (-i).

External Email - Use Caution Hello Douglas, If I do ls $SUBJECTS_DIR/ben, the T1 image will show up as predicted. However if I tried to recon-all, the error will pop up. Many Thanks Peng Liu, PhD Candidate Institut für Kognitive

[Freesurfer] (no subject)

the .lut file (attached below), when loading it into freeview, the colour scale is from 0 to 6. [image: image.png] Does this mean I should also include scale information in the .lut file? Any help would be much appreciated. Peng Liu Map.lut Description: Binary data

[Freesurfer] Customizing colour map

the .lut file (attached below), when loading it into freeview, the colour scale is from 0 to 6. [image: image.png] Does this mean I should also include scale information in the .lut file? Any help would be much appreciated. Peng Liu Map.lut Description: Binary data

Re: [Freesurfer] (no subject)

s indices between 0 to 6. In any case I > would not use look up table to display negative scales. Have you tried any > other color maps like JET or NIH which has more colors? > > Best, > Ruopeng > > On Apr 6, 2020, at 6:30 AM, Peng Liu wrote: > > External Email - Use

Re: [Freesurfer] (no subject)

gt; On Apr 6, 2020, at 10:35 AM, Peng Liu wrote: > > External Email - Use Caution > > Hi Ruopeng, > > Thank you for your reply. > > I have also tried NIH and JET, but with negative scale, the entire image > will turn into one same color as if there is some error. &g

[Freesurfer] Recon-all Talairach failed error

'mni305.cor.mgz' be okay as reference image? Any help would be much appreciated. Kindly Regards Peng Liu [image: Otto-von-Guericke University Magdeburg] Peng Liu, PhD Candidate Institut für Kognitive Neurologie und Demenzforschung (IKND)

[Freesurfer] Brodmann area labels

[image: Otto-von-Guericke University Magdeburg] Peng Liu, PhD Candidate Institut für Kognitive Neurologie und Demenzforschung (IKND) Otto-von-Guericke Universität Magdeburg Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE) Leipziger Str. 44| Haus 64| Raum 217 39120 Magde

Re: [Freesurfer] Brodmann area labels

, I wonder how would I get other labels, which command should I run? Many Thanks PL On Wed, 24 Jun 2020 at 16:09, Douglas N. Greve wrote: > I'm not sure what you mean by "like lh.BA3b.label". Are you just talking > about the file name or the actual label? > > On 6/24/2

Re: [Freesurfer] Brodmann area labels

#x27;lh.BA3b*_exvivo*.label' is the label you want. The _exvivo just > means that the data that went into the prediction was acquired on ex vivo > brains. > > Cheers > > Bruce > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr

Re: [Freesurfer] Brodmann area labels

not working as it should be? > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Peng Liu > *Sent:* Thursday, June 25, 2020 7:23 AM > *To:* Freesurfer support list > *Subject:* Re: [Freesurfer] Brodmann area

Re: [Freesurfer] Brodmann area labels

at do you mean with 'not working'? Is an incorrect area highlighted on > the brain? Does some command you are using respond with an error message? > > Tim > > > On June 25, 2020 at 5:33 PM Peng Liu wrote: > > > > > > External Email - Use Cauti