External Email - Use Caution I usually convert BA3b.label to a nifti mask with SPM to perform ROI analysis. But with exvivo label, the mask seems not working.
Many Thanks PL On Thu, 25 Jun 2020 at 16:24, Fischl, Bruce <bfis...@mgh.harvard.edu> wrote: > Can you elaborate? What do you mean it is not working as it should be? > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Peng Liu > *Sent:* Thursday, June 25, 2020 7:23 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* Re: [Freesurfer] Brodmann area labels > > > > * External Email - Use Caution * > > Hi Bruce, > > > > I have tried this label, but it seems not working as it should be. That is > why I wanted to create labels like before. > > > > Thank you so much! > > > > PL > > > > On Wed, 24 Jun 2020 at 16:58, Fischl, Bruce <bfis...@mgh.harvard.edu> > wrote: > > Hi Peng > > > > I think 'lh.BA3b*_exvivo*.label' is the label you want. The _exvivo just > means that the data that went into the prediction was acquired on ex vivo > brains. > > Cheers > > Bruce > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Peng Liu > *Sent:* Wednesday, June 24, 2020 7:38 AM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] Brodmann area labels > > > > * External Email - Use Caution * > > Dear Freesurfer experts, > > > > I was trying to perform some ROI analysis with results obtained from > recon-all. However I noticed that after recon-all, the labels created were > like 'lh.BA3b*_exvivo*.label', whereas the labels I would want to create > are like 'lh.BA3b.label'. > > > > I have tried mri_annotation2label command, but the results I got were not > as wanted either. > > > > Does anyone know how to create labels like 'lh.BA3b.label'? > > > > Any help would be appreciated a lot! > > > > Many Thanks > > > > PL > > -------------------------------------------- > > [image: Otto-von-Guericke University Magdeburg] > > > > Peng Liu, PhD Candidate > > > > Institut für Kognitive Neurologie und Demenzforschung (IKND) > > Otto-von-Guericke Universität Magdeburg > > Deutsches Zentrum für Neurodegenerative Erkrankungen e.V. (DZNE) > > > > Leipziger Str. 44| Haus 64| Raum 217 > > 39120 Magdeburg, Deutschland > > > > Email: peng....@med.ovgu.de/peng....@dzne.de > > Phone: +49 391 67 25074 > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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