have any idea what might be going wrong with this subject or what this
error message (if: Expression Syntax) means?
Thanks,
Keji
---
Morenikeji Adebayo
Clinical Research Coordinator
Department of Psychiatric Neuroscience
Massachusetts General Hospital
(p) 617.643.6347
k...@nmr.mgh.harvard.edu
Hi there,
I’m running stable:
source /usr/local/freesurfer/stable5_3_0
Thanks,
Keji
> On Jul 21, 2015, at 4:56 PM, Douglas Greve wrote:
>
> what environment are you running in? ie, dev or stable?
>
> On 7/21/15 2:12 PM, Morenikeji Adebayo wrote:
>> Hi there,
>>
u run the following
>
> preproc-sess -debug -s nmasa_031_130412 -fsd bold -stc up -surface
> fsaverage lhrh -min305 -fwhm 5 -per* |& tee fordoug.log
>
> and send me fordoug.log
>
>
>
>
> On 07/22/2015 02:12 PM, Morenikeji Adebayo wrote:
>> Hi there,
>
015 04:02 PM, Morenikeji Adebayo wrote:Hi Doug,When I run:preproc-sess -debug -s nmasa_031_130412 -fsd bold -stc up -surface fsaverage lhrh -min305 -fwhm 5 -per* |& tee fordoug.logI get:preproc-sess: No match.Thanks,KejiOn Jul 22, 2015, at 3:37 PM, Douglas N Greve <gr...@nmr.mgh.harvard.e
I sure can. Hopefully. Is the what you need?
fordoug.log
Description: Binary data
On Jul 22, 2015, at 5:01 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote:can you just send the log and not put it into a doc file?On 07/22/2015 04:46 PM, Morenikeji Adebayo wrote:No problem! Here you go.
Just following up. Did i send the log in the correct format?
Thanks,
Keji
On Jul 22, 2015, at 5:30 PM, Morenikeji Adebayo wrote:
> I sure can. Hopefully. Is the what you need?
>
>
>
>> On Jul 22, 2015, at 5:01 PM, Douglas N Greve
>> wrote:
>>
>> can
hm 5 -per |& tee fordoug.logThanks,Keji
fordoug (3).log
Description: Binary data
On Jul 23, 2015, at 6:05 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote:Yes, but you have a typo -min305 instead of -mni305On 07/22/2015 05:30 PM, Morenikeji Adebayo wrote:I sure can. Hopefully. Is the
g -fsd bold -dof 6
-per-run -update |& tee fordoug2.log
and send me fourdoug2.log
doug
On 7/24/15 10:22 AM, Morenikeji Adebayo
wrote:
Hi there,
Attached is the log file from running:
pr
name
>
> It looks like it is "cd nmasa_031_130412", probably it should be
> "nmasa_031_130412" ?
>
>
>
> On 7/24/15 11:58 AM, Morenikeji Adebayo wrote:
>> Hi Doug,
>>
>> fordoug2 is attached.
>>
>> Thanks,
&g
That fixed it! Thanks for all your help - I appreciate it.
Keji
> On Jul 24, 2015, at 12:17 PM, Morenikeji Adebayo
> wrote:
>
> Oh excellent, you are correct! I’ll update the file and try re-running
> selxavg.
>
> Thanks,
> Keji
>
>> On Jul 24, 2015, at 12:
irach coordinates. Is there a way to specify the
output in MNI coordinates?
Thanks,
Keji
---
Morenikeji Adebayo
Clinical Research Coordinator
Department of Psychiatric Neuroscience
Massachusetts General Hospital
(p) 617.643.6347
k...@nmr.mgh.harvar
015, at 11:32 AM, Douglas N Greve
> wrote:
>
>
>
> On 08/10/2015 10:47 AM, Morenikeji Adebayo wrote:
>> Hi there,
>>
>> I have a a couple of question related to the output generated by the
>> ‘mri_volcluster' command.
>>
>> 1) It seem
Hi there,
Just following up. Any advice would be much appreciated!
Thanks,
Keji
> On Aug 10, 2015, at 1:50 PM, Morenikeji Adebayo
> wrote:
>
> Hi there,
>
> The command I submitted is:
> mri_volcluster --in merged_encode_Young_NEUT_hit_V_miss_n41.nii.gz --thmin
> 1
using svd
Input to SVD must not contain NaN or Inf.
Error in cond (line 36)
s = svd(A);
Error in fast_selxavg3 (line 279)
XCond = cond(XtX);
Any help on this error would be much appreciated!
Thanks,
Keji
---
Morenikeji Adebayo
Clinical Research Coordinator
Department of Psychiatric
Hello Freesurfers,
I'm interested in creating a group map where each vertex represents the
correlation (as a correlation coefficient) between a task-related BOLD contrast
value (ces.nii.gz) and a single covariate. This is analogous to a cortical
thickness GLM with one group and one covariate, b
_glmfit
>
>
>
> On 11/17/2016 06:20 PM, Morenikeji Adebayo wrote:
>> Hello Freesurfers,
>>
>> I'm interested in creating a group map where each vertex represents the
>> correlation (as a correlation coefficient) between a task-related BOLD
>> contra
Hi there,
I’m having trouble running the script. Should I place the script in the
$FSFAST/bin directory? Any advice on how to run the this version of mri_glmfit
would be much appreciated.
Thanks,
Keji
> On Nov 17, 2016, at 6:48 PM, Morenikeji Adebayo
> wrote:
>
> Thanks, Doug
generate the Pearson
correlation maps?
Thanks!
Keji
---
Morenikeji Adebayo
Junior Research Fellow
Department of Psychiatric Neuroscience
Massachusetts General Hospital
(p) 617.643.6347
k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu>
>
>> On Nov 17, 2016, at 6:48 PM, Mor
F.nii.gz
gamma.nii.gz
gammavar.nii.gz
maxvox.dat
sig.nii.gz
z.nii.gz
Thanks,
Keji
---
Morenikeji Adebayo
Junior Research Fellow
Department of Psychiatric Neuroscience
Massachusetts General Hospital
(p) 617.643.6347
k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu>
> On Nov
Ok - no problem. I’ll run again without -wls.
Thanks!
Keji
---
Morenikeji Adebayo
Junior Research Fellow
Department of Psychiatric Neuroscience
Massachusetts General Hospital
(p) 617.643.6347
k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu>
> On Nov 29, 2016, at 2:52 PM,
Just following up on this - thanks!
> On Sep 29, 2015, at 1:29 PM, Morenikeji Adebayo
> wrote:
>
> Hi there,
>
> I’m running into difficulty executing the “selexavg3-sess” command for a few
> participants. For example, when I run the command:
>
> foreach c(lh
ed on their aparc+aseg file and 2. calculate the mean contrast
signal from each ROI for each participant).
Thanks,
Keji
---
Morenikeji Adebayo
Clinical Research Coordinator
Department of Psychiatric Neuroscience
Massachusetts General Hospital
(p) 617.643.6347
k...@nmr.mgh.harvar
Hi there,
Just following up on this. Any help would much appreciated!
Thanks,
Keji
> On Oct 23, 2015, at 1:46 PM, Morenikeji Adebayo
> wrote:
>
> Hi there,
>
> I ran the following analysis commands:
>
> mri_cor2label --c
> /autofs/cluster/iaslab/NMASA/mr
ng something like
>
> funcroi-config -annot aparc.a2009s G_and_S_cingul-Ant -analysis
> analysis_induc_block.lh -roi roiconfig_ACC_lh
>
>
>
> On 10/23/15 1:46 PM, Morenikeji Adebayo wrote:
>> Hi there,
>>
>> I ran the following analysis commands:
>&g
Thanks!!
> On Oct 27, 2015, at 1:18 PM, Douglas Greve wrote:
>
>
>
> On 10/27/15 1:09 PM, Morenikeji Adebayo wrote:
>> Hi Doug,
>>
>> Thanks for the help! So, you’re saying that:
>>
>> By specifying a volume file (ie: aparc.a2009s+aseg.mgz) when
anks,
Keji
---
Morenikeji Adebayo
Clinical Research Coordinator
Department of Psychiatric Neuroscience
Massachusetts General Hospital
(p) 617.643.6347
k...@nmr.mgh.harvard.edu
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
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ing the command from.
Thanks,
Keji
---
Morenikeji Adebayo
Clinical Research Coordinator
Interdisciplinary Affective Science Lab
Massachusetts General Hospital
Department of Psychiatric Neuroscience
(p) 617.643.6347
(f) 617.726.5760
k...@nmr.mgh.harvard.edu
__
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