Hi there, I’m running stable:
source /usr/local/freesurfer/stable5_3_0 Thanks, Keji > On Jul 21, 2015, at 4:56 PM, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > > what environment are you running in? ie, dev or stable? > > On 7/21/15 2:12 PM, Morenikeji Adebayo wrote: >> Hi there, >> >> When running selxavg for the following session: >> >> >> >> nmasa_031_130412 >> >> >> >> The following >> error message was generated: >> >> >> >> Error using MRIread (line 76) >> ERROR: cannot determine format of >> /autofs/cluster/iaslab/NMASA/mri/func/encoding/nmasa_031_130412/bold/015/masks/brain.mni305.2mm >> (MRIread) >> >> >> >> Error in fast_selxavg3 (line 146) >> runmask = MRIread(flac.maskfspec); >> >> I did some investigating and discovered that all the bold runs for this >> participant are missing the following files: >> >> .../func/encoding/nmasa_031_130412/bold/015/masks/brain.mni305.2mm >> >> .../func/encoding/nmasa_031_130412/bold/015/masks/brain.fsaverage.lh.nii.gz >> .../func/encoding/nmasa_031_130412/bold/015/masks/brain.fsaverage.rh.nii.gz >> >> >> >> So I ran: >> >> >> >> preproc-sess -s >> nmasa_031_130412 -fsd bold -stc up -surface >> fsaverage lhrh -min305 -fwhm 5 -per >> >> >> >> >> >> >> Which generated the following error >> message: >> >> >> >> if: Expression Syntax >> >> Do you have any idea >> what might be going wrong with this subject or what >> this error message (if: Expression Syntax) means? >> >> >> >> >> >> >> Thanks, >> Keji >> --- >> Morenikeji Adebayo >> Clinical Research Coordinator >> Department of Psychiatric Neuroscience >> Massachusetts General Hospital >> (p) 617.643.6347 >> k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer --- Morenikeji Adebayo Clinical Research Coordinator Department of Psychiatric Neuroscience Massachusetts General Hospital (p) 617.643.6347 k...@nmr.mgh.harvard.edu
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