Hi there, The command I submitted is: mri_volcluster --in merged_encode_Young_NEUT_hit_V_miss_n41.nii.gz --thmin 1.3 --minsizevox 5 --sign neg --sum adebayo_young_neut_p.05 —fsaverage
How would I: 1) Specify the voxel size 2) Have the results output in MNI? Thanks, Keji > On Aug 10, 2015, at 11:32 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> > wrote: > > > > On 08/10/2015 10:47 AM, Morenikeji Adebayo wrote: >> Hi there, >> >> I have a a couple of question related to the output generated by the >> ‘mri_volcluster' command. >> >> 1) It seems that the command automatically assumes that my voxels are >> 8 mm^3. Is there a way to specify my voxel size when I run the command? > It should use whatever the voxel size of the input is. Remember to > include a command line. >> >> 2) The output is given in Talairach coordinates. Is there a way to >> specify the output in MNI coordinates? > Can tell without your command line >> >> >> Thanks, >> Keji >> >> --- >> Morenikeji Adebayo >> Clinical Research Coordinator >> Department of Psychiatric Neuroscience >> Massachusetts General Hospital >> (p) 617.643.6347 >> k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > --- Morenikeji Adebayo Clinical Research Coordinator Department of Psychiatric Neuroscience Massachusetts General Hospital (p) 617.643.6347 k...@nmr.mgh.harvard.edu
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