Re: [Freesurfer] Use of infantFS and FS in the interval 2 - 4.5 years of age

External Email - Use Caution Dear All, any feedback? Appreciated! Regards, Mic > Il giorno 2 ott 2023, alle ore 17:27, michefabb ha > scritto: > >  > Dear FS experts, > > I see it is recommended to use infantFS below 2 years of age, whereas FS has > been used for 4.5 year

[Freesurfer] Use of infantFS and FS in the interval 2 - 4.5 years of age

External Email - Use Caution Dear FS experts, I see it is recommended to use infantFS below 2 years of age, whereas FS has been used for 4.5 years and above. I was wondering what could be used in the interval 2 - 4.5 years of age: which are benefits and drawbacks of both? Than

Re: [Freesurfer] Infant fs

External Email - Use Caution Dear Lilla, I posted a similar question some week ago, I quote it here again, I would be grateful if you could provide feedback. Regards, Mic From: Michelangelo Fabbrizzi mailto:michef...@gmail.com>> Date: Wednesday, October 11, 2023 at 11

Re: [Freesurfer] mri_watershed and improvements of skullstripping

boun...@nmr.mgh.harvard.edu > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu> > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Michelangelo > Fabbrizzi mailto:michef...@gmail.com>> > Sent: Saturday, August 5, 2023 11:33 AM > To: Freesurfer support list <

[Freesurfer] Problem installing FreeSurfer

External Email - Use CautionDear Sirs,I am new to Freesurfer. I installed as shown on website and added the license.txt, however when I open freeview I get an error "/Applications/freesurfer/7.4.0/bin/freeview: riga 2:  2047 Segmentation fault: 11  $FREESURFER_HOME/Freeview.app/Cont

Re: [Freesurfer] Problem installing FreeSurfer

w with no arguments to see if it brings up an empty > window, > > $ freeview > > If that works, quit freeview and try running it again with an example volume > included in the distribution, > > $ freeview $SUBJECTS_DIR/bert/mri/brain.mgz > > If that works, quit

[Freesurfer] mri_watershed and improvements of skullstripping

External Email - Use Caution Dear Freesurfer experts, I am new to FS, and I would have couple of questions. I used in sequence: A- recon-all -i sub-01_T1w.nii.gz -s sub-01_recon -autorecon1 B- recon-all -skullstrip -wsthresh 5 -clean-bm -s sub-01_recon C- recon-all -skullstri

Re: [Freesurfer] mri_watershed and improvements of skullstripping

, Michelangelo > Il giorno 30 lug 2023, alle ore 15:32, Michelangelo Fabbrizzi > ha scritto: > > Dear Freesurfer experts, > > I am new to FS, and I would have couple of questions. > I used in sequence: > A- recon-all -i sub-01_T1w.nii.gz -s sub-01_recon -autorecon1 &g

Re: [Freesurfer] mri_watershed and improvements of skullstripping

adding ‘-careg’ at the end of command line.   Best,   Yujing     From: freesurfer-boun...@nmr.mgh.harvard.edu On Behalf Of Michelangelo Fabbrizzi Sent: Sunday, July 30, 2023 11:34 AM To: freesurfer@nmr.mgh.harvard.edu; fsbuild ; freesurfer-ow...@nmr.mgh.harvard.edu Subject: Re: [Freesurfer

Re: [Freesurfer] mri_watershed and improvements of skullstripping

nmask.mgz > already created. > > Recon-all '-gcut' is achieved by running mri_gcut after mri_watershed. > > -Original Message- > From: freesurfer-boun...@nmr.mgh.harvard.edu > On Behalf Of Michelangelo Fabbrizzi > Sent: Sunday, July 30, 2023

Re: [Freesurfer] mri_watershed and improvements of skullstripping

MNE Greatly appreciated! > Il giorno 5 ago 2023, alle ore 17:33, Michelangelo Fabbrizzi > ha scritto: > > Dear Experts, > > I reran -autorecon1 with the -expert option adding in the file xopts.txt: > mri_normalize -mprage -b 20 -n 5 -gentle \n mri_watershed -h 5 -atlas