External Email - Use Caution Dear all,
thanks for your reply. I did as below and the first time I run the command “freeview”, it works. Then if I try to open it again, it gives the same error as below…can you help me please? Thanks, appreciated, Michelangelo > Il giorno 31 mag 2023, alle ore 23:43, fsbuild <fsbu...@contbay.com> ha > scritto: > > > Please make sure you have downloaded a freesurfer license.txt file by filling > out the form at, > https://secure-web.cisco.com/1hc5Xc7px__3EjuoO1_Ni4orsJzMv2R3iM-TJ3g17W6pD1Jv2-zP7lu8luJ73VfXWqrsbHX_7eZc4dqW0qWuk88NFuUNQxZ7E35P7PaGZrx3_HXCb5RW8jZWDDtzYCB_ukWSy3Fz5lbERnNvMc0l8SgVPh66EIA3pkAdAz9x6wHNX_sxP2xYQ4KCLPgHYRndbQ5stn4tNAVOQ7iNJMa_86RhGR2kP6sEXQ_MQzPRxYuQdUq-PQnSOzmYT1KnKZFMtzRCEAgwtXdhwDvUybAWLzyl6qjmND8kf0yQveUBT1m0eM_PHPXIOqS9cs64lCoxG/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fregistration.html > > <https://secure-web.cisco.com/1hc5Xc7px__3EjuoO1_Ni4orsJzMv2R3iM-TJ3g17W6pD1Jv2-zP7lu8luJ73VfXWqrsbHX_7eZc4dqW0qWuk88NFuUNQxZ7E35P7PaGZrx3_HXCb5RW8jZWDDtzYCB_ukWSy3Fz5lbERnNvMc0l8SgVPh66EIA3pkAdAz9x6wHNX_sxP2xYQ4KCLPgHYRndbQ5stn4tNAVOQ7iNJMa_86RhGR2kP6sEXQ_MQzPRxYuQdUq-PQnSOzmYT1KnKZFMtzRCEAgwtXdhwDvUybAWLzyl6qjmND8kf0yQveUBT1m0eM_PHPXIOqS9cs64lCoxG/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fregistration.html> > > Place the license.txt file you will receive in your home directory, e.g., > > $ cd $HOME > $ head -1 license.txt > <email you used to register> > > Set the FS_LICENSE environment variable manually (and/or in your shell > initialization file, e.g., .bashrc) to point to the license file, > … here set from a terminal window running bash shell ... > > $ export FS_LICENSE=$HOME/license.txt > > Setup the freesurfer environment, > > $ export FREESURFER_HOME=/Applications/freesurfer/7.4.0 > $ source $FREESURFER_HOME/SetUpFreeSurfer.sh > -------- freesurfer-darwin-macOS-7.4.0-20230504-55dcf98 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > FREESURFER_HOME /Applications/freesurfer/7.4.0 > FSFAST_HOME /Applications/freesurfer/7.4.0/fsfast > FSF_OUTPUT_FORMAT nii.gz > SUBJECTS_DIR /Applications/freesurfer/7.4.0/subjects > MNI_DIR /Applications/freesurfer/7.4.0/mni > > $ which freeview > /Applications/freesurfer/7.4.0/bin/freeview > > Then try running freeview with no arguments to see if it brings up an empty > window, > > $ freeview > > If that works, quit freeview and try running it again with an example volume > included in the distribution, > > $ freeview $SUBJECTS_DIR/bert/mri/brain.mgz > > If that works, quit freeview and try your own surface/volume files. > > - R. > >> On May 31, 2023, at 17:05, Michelangelo Fabbrizzi <michef...@gmail.com> >> wrote: >> >> External Email - Use Caution >> >> >> Dear Sirs, >> >> I am new to Freesurfer. I installed as shown on website and added the >> license.txt, however when I open freeview I get an error >> "/Applications/freesurfer/7.4.0/bin/freeview: riga 2: 2047 Segmentation >> fault: 11 $FREESURFER_HOME/Freeview.app/Contents/MacOS/freeview "$@“” >> Attached the report. >> >> Freesurfer version: freesurfer-darwin-macOS-7.4.0-20230510-e558e6e >> Platform: MacOS12.6.6 >> Mac: Macbook Pro Intel Core i5 dual-core >> XQuartz2.8.15 >> XQuartz2.8.5 >> Can you help me please? >> >> Thanks! >> >> Michelangelo >> <report.txt> > >
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