[Freesurfer] ERROR: cannot find -cw256

2012-06-22 Thread Liat Levita
Hello All, I am geting the following error: see below: Did I miss something in the installation? Sorry if I have. Thank you for your help in advance. Liat - FREESURFER_HOME: /Applications/freesurfer Build stamp: freesurfer-

[Freesurfer] Senior Lecturer Post at York University

2009-05-14 Thread Liat Levita
Dear all,  A Senior Lecturer Post has now opened at York University, England.  https://www22.i-grasp.com/fe/tpl_YorkUni01.asp?newms=jj&id=25711 (https://www22.i-grasp.com/fe/tpl_YorkUni01.asp?newms=jj&id=25711)  Senior Lecturer Job referenceUoY00368LocationYork, UKBased atUniversity of Y

[Freesurfer] wiki problem

2008-06-10 Thread Liat Levita
I am sure you are aware of this problem, but since last week we have been unable to access the FreeSurfer wiki (http://surfer.nmr.mgh.harvard.edu/docs/index.html). Is it down for maintenance? and if so when will it be up again? I have just started using FreeSurfer, hence having major problems w

Re: [Freesurfer] wiki problem

2008-06-11 Thread Liat Levita
king you to accept a > certificate. ( secure http connection ) > > -Krish > > On Jun 10, 2008, at 6:52 PM, Liat Levita wrote: > > I am sure you are aware of this problem, but since last week we > have > > been unable to access the FreeSurfer wiki > (http://surf

Re: [Freesurfer] wiki problem

2008-06-13 Thread Liat Levita
.183.202.158/fswiki > > If that works, then the problem is likely with DNS at Cornell, in > which case you'll need to contact your network helpdesk. > > On Jun 11, 2008, at 8:31 AM, Liat Levita wrote: > > > Hi Krish, > > > > I am afraid we had no joy wi

[Freesurfer] Prob:Software Download Tiger version \

2008-06-16 Thread Liat Levita
Hi, I am trying to download the updated FreeSurfer - Mac OS X Tiger (10.4.11) PowerPC stable v4.0.5 15 June 2008 - freesurfer-Darwin-tiger-ppc-stable-pub-v4.0.5-full.dmg However, when I do so I keep getting the zipped Leopard package. I wonder if something is wrong with the link to the

Re: [Freesurfer] Prob:Software Download Tiger version \

2008-06-16 Thread Liat Levita
lbeit on > a Linux machine), it downloads that filename. > > You could try: > > wget > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer-Darwin-tiger- > ppc-stable-pub-v4.0.5-full.dmg > > from a terminal as an alternative. > > Nick > > > On Mon, 2008-

[Freesurfer] X11 - FreeSurfer hot-key problem Mac

2008-06-17 Thread Liat Levita
Hello, I wonder if anyone else has had this problem on the Mac. I have now installed FreeSurfer (Tiger V4.0.5) on 3 machines, everytime I do this some of my shortcut X11 keys stop working. We are running - X11 1.1.3 - on a Mac OS X 10.4.11 I would really appricate your help with this - Does

[Freesurfer] Re: Further questions regarding freesurfer 4.0.5

2008-06-18 Thread Liat Levita
m within "tk::CheckRadioInvoke .wwEditSegBrushInfoDlog.lfwFill.border.frame.fwFill.fwSegSrc.rbw" (command bound to event) *** *** *** *** *** Liat Levita, PhD Instructor of Psychology in Psychiatry Sackler Institute for Developmental Psychobiology Weill Medical College of Cornell University 1300

[Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Liat Levita
Hello, I wonder if anyone using AFNI converted freesurfer files has come across this problem (or can tell me if I making an error somewhere that I am just not seeing right now). I posted the same question on the AFNI board but haven't gotten feedback as yet. Here is the problem: After using f

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Liat Levita
and pscA are the same dimension? Remember, > freesurfer resamples everything into 1mm3, 256^3 > > doug > > > > Liat Levita wrote: > > >Hello, > >I wonder if anyone using AFNI converted freesurfer files has come > across this problem (or can tell me if I

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Liat Levita
nctional data directly to the anatomical > (fslregister or spmregister) rather than going thru the talairach > transform. You can then use mri_vol2vol to map the functional to > the > anatomical, then mri_segstats to exctract the average functional > value > (or you can probably use t

Re: [Freesurfer] AFNI /freesurfer aseg files problem

2008-07-28 Thread Liat Levita
s symetrical? > > doug > > > R-to-L extent: -79.500 [R] -to-79.500 [L] -step- 3.000 mm > [ 54 > voxels] > A-to-P extent: -79.500 [A] -to- 109.500 [P] -step- 3.000 mm > [ 64 > voxels] > I-to-S extent: -63.500 [I] -to- 83.500 [S] -step-