built or in 5.3.
>
> Thanks.
>
> Also, not sure if it's placebo, but freeview seems to be running
> quicker now.
>
> Best Wishes,
>
> Elijah
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mg
make sense).
>
> Thank you.
>
> Best Wishes,
> Elijah
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mai
incerely
>
> Marine Moyon
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@
would be able to help point me in the right direction.
>>
>> Thank You
>>
>>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/f
) so
> I can see the spread of values in each group?
>
> Thanks,
> Siti
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Gr
n issue.
>
>
> Thanks a bunch,
>
>
> Kristine
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR
_
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
File
fer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: htt
; recognized (surface0, surface1, curv0...), although they are in the
> instructions. Is there something else I should be aware of?
>
> thanks again,
> Gari
>
> On Mon, Nov 28, 2016 at 11:57 PM Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
>
only for
>> >> the person to
>> >> whom it is
>> >> addressed. If you believe this e-mail was sent
>> to you
>> >> in error
>> >> and the e-mail
>> >> cont
atric Neuroscience
> Massachusetts General Hospital
> (p) 617.643.6347
> k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mgh.harvard.edu>
>
>
>
>>
>>> On Nov 17, 2016, at 6:48 PM, Morenikeji Adebayo
>>> mailto:k...@nmr.mgh.harvard.edu>>
orrect?
>
> On Tue, Nov 29, 2016 at 1:39 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> don't use the orientation strings unless the orientation is wrong
>
>
> On 11/29/2016 01:38 PM, Bruce Fischl wrote:
> > you may not nee
> sig.nii.gz
> z.nii.gz
>
>
>
>
> Thanks,
> Keji
>
>
> ---
> Morenikeji Adebayo
> Junior Research Fellow
> Department of Psychiatric Neuroscience
> Massachusetts General Hospital
> (p) 617.643.6347
> k...@nmr.mgh.harvard.edu <mailto:k...@nmr.mg
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvar
search for an
> interaction between age and the condition variable? I only care
> about differences in cortical thickness.
>
> Any suggestion is very welcome, thanks in advance for your answer.
>
>
> Rodrigo
>
>
>
>
>
>
>
>
>
>
>
>
t; -i
>>> /Volumes/JGG_WD_4TB_hard_drive_2/raw_data_UIC_3T/1039/raw_reordered/006-SAG_FSPGR_BRAVO_PURE_REPEAT/4355-0006-1
>>> -s 1039
>>> ERROR: cannot find
>>> /Applications/freesurfer_v6beta_16Nov2016/average/RB_all_2008-03-26.gca
>>>
>>>
Sciences
> Rush University Medical Center
> Phone: (312) 563-3853
> Fax: (312) 563-4660
> Email: douglas_merki...@rush.edu <mailto:douglas_merki...@rush.edu>
>
>
>
>
>
> On Nov 29, 2016, at 4:15 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>&g
-SAG_FSPGR_BRAVO_PURE_REPEAT/4355-0006-1
>
> )
>
>
> if ( $nth == 1 ) then
> if ( 1 == 1 ) then
>
> set firstInput = ( $InputVol )
> set firstInput = (
> /Volumes/JGG_WD_4TB_hard_drive_2/raw_data_UIC_3T/1039/raw_reordered/005-SAG_FSPGR_BRAVO_PURE/4355-0005-1
>
Email: douglas_merki...@rush.edu <mailto:douglas_merki...@rush.edu>
>
>
>
>
>
> On Nov 29, 2016, at 5:01 PM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>>
> wrote:
>
>> It is not recognizing that the input is a dicom file. Is 4355-0005-1
>&
ves it problems?
>
> Thanks,
>
> Doug
>
> Douglas Merkitch
> Neurological Sciences
> Rush University Medical Center
> Phone: (312) 563-3853
> Fax: (312) 563-4660
> Email: douglas_merki...@rush.edu <mailto:douglas_merki...@rush.edu>
>
>
>
>
>
orrespond to the output 'Does the average
>>> thickness accounting for gender differ between patient and control?
>>> (age as nuisance variable)’ because the statistical maps look the same.
>>>
>>> From what I understand, this difference in the results w
gt; Thanks a lot.
>
> Best Wishes,
> Elijah
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.
Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswik
_ > Freesurfer mailing
> list > Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu> >
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer --
> Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu
> <
mat in nifti with mricron but the
> reconstruction failed)
>
> Thanks in advance,
>
> Marianna
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
D
rt.
>
> Thanks in advance,
> Marianna
>
>
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Friday, December 2, 2016 12:17 PM
> To: freesurfer@nmr.mgh.harvard.
gt;
> Regards,
>
> Antonin Skoch
>
>
> ___________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...
id and meanthickness),
> so bacially, they have just 34 labels add one 'unknown', it should
> have 35 labels, but I did not find the lable
> 'corpuscallosum', Can someone help me???
> The result file for aparcstat2table file is attached:)
> Thanks in ad
n advance,
> Marianna
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
> Sent: Monday, December 5, 2016 12:00 PM
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Frees
tric Neuroimaging
>
> Massachusetts General Hospital
>
> 149 13th Street
>
> Charlestown, MA, 02129
>
> (p) (617) 643 - 2479
>
>
>
> ___________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman
t; Kind regards
>
>
> Stefano
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvar
Thank you very much.
>
> Su
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
F
ed it
>>
>> -Original Message-
>> From: freesurfer-boun...@nmr.mgh.harvard.edu
>> [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve
>> Sent: Monday, December 5, 2016 12:13 PM
>> To: freesurfer@nmr.mgh.harvard.edu
>> Subject: Re: [Free
;
> Any help would be greatly appreciated.
>
> Regards.
>
> Ilaria
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, P
have had an opportunity to enter an email address of
>> the recipient. You can use my email
>>
>>
>> On 12/5/16 6:35 PM, Marianna Riello wrote:
>>> I uploaded the dicom mosaic on Martinos Center.
>>> I am wondering whether you received it
>>>
se two
>> group, how do i visualize the result in sphere???
>>
>>
>> Really need your help
>>
>> Any help will be appreciated
>>
>> Hao
>>
>>
>>
>> ___
>> Freesurfer mailing list
>> Fr
gt; Xavier Guell.
>
>
>
> Xavier Guell Paradis, M.D.
> Visiting Scientist
> Massachusetts Institute of Technology
> McGovern Institute for Brain Research
> Office: 46-4033A
> Phone: (617) 324-4355
> Email: xavie...@mit.edu
>
>
>
may be my mistake.
>
> Thank you
>
> Shady
>
> --
> *Shady Rahayel*
> Étudiant au Ph.D. en neuropsychologie R/I
> Université du Québec à Montréal
>
> Centre d'Études Avancées en Médecine du Sommeil
> Hôpital du Sacré-Coeur de Montréal
>
>
>
ksurfer, tkmedit or freeview??
> Thanks very much
>
> *De :* freesurfer-boun...@nmr.mgh.harvard.edu
> de la part de Douglas N Greve
>
> *Envoyé :* mardi 6 décembre 2016 23:21
> *À :* freesurfer@nmr.
hedule of 12 stimuli to allow the hemodynamic response to return to
> > baseline while presenting the new instructions?
> >
> There is not a way to include the instructions in optseq. I would keep
> the best 12-stimulus sequences from optseq. You don't need to wait 30
> sec, 15 sec
-4033A
> Phone: (617) 324-4355
> Email: xavie...@mit.edu
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@n
he error that stopped the reconstruction when I tried to run the nifti
> version of the "mosaic' dicom; I transformed the dmc2nii with MRIcron.
>
> Thanks,
> Marianna
>
> -Original Message-
> From: freesurfer-boun...@nmr.mgh.harvard.edu
> [mailto:freesurfe
-based coordinate
system. Neuroimage 9, 195-207.
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu
; there any way to take profit from the wm segmentation of the older
> version?
>
> Thanks in advance,
>
> Edu V.
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/m
verage surface?
>>
>> Thanks
>>
>> Cris
>>
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
&g
arvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.har
;
> Thank you,
>
> Octavian
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.ha
rvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/f
a
>>
>>
>>
>>
> ___________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh
__
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.ed
Thu Dec 15 16:14:29 EST 2016
>
>
>
>
>
>
> Regards
> /Sadhana Singh, PhD /
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
>
> __
man/listinfo/freesurfer>
> ___ Freesurfer mailing
> list Freesurfer@nmr.mgh.harvard.edu
> <mailto:Freesurfer@nmr.mgh.harvard.edu>
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> <https://mail.nm
0 0.000 0.000 0.000 0.000 0.000 0.000 1.000 0.000
> 0.000
> 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000 0.000
> 0.524;
> 0.000 0.000 0.000 0.000 0.000 1.000 0.000 0.000 0.000
> 0.000
> 0.000 0.000 0.000 0.00
; Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harva
OR AD) in each file
> and correlate with depression by running contrast [0 1]? Sorry about
> this silly question, just wanted to double check as I am new to
> freesurfer!
>
Yes, that will work
>
>
> Thanks for your help in advance!
>
>
> Regards,
>
> Jen
>
>
&g
uld change neither unless I change --trgsubject to some other. Am i
> right?
>
> thanks
>
> regards
>
> VM
>
> On Thu, Dec 22, 2016 at 11:32 AM, Douglas N Greve
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
>
>
> On 12/22/2016 01:33 PM, neuro
7;real' age
> in my fsgd file when looking at cortical thickness differences in the
> MCI/AD/control group?
>
> Thank you very much! Really appreciate it!
>
> Jen
>
>> On 23 Dec. 2016, at 6:41 am, Douglas N Greve
>> wrote:
>>
>>
>>
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
File
s), I know in FS, we can use mri_glmfit to have
> the significance map
>
>
> Any advice will be appreciated
>
>
> Hao
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.ha
inska University Hospital | Department of Radiology
> 141 86 Stockholm, Sweden
> Cellular: +46 700 60 60 87
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/fr
Forwarded Message
Subject:REMINDER: OHBM 2017 Call For Council Nominations
Date: Thu, 05 Jan 2017 05:31:34 -0600
From: i...@humanbrainmapping.org
Reply-To: i...@humanbrainmapping.org
To: gr...@nmr.mgh.harvard.edu
Dear OHBM Member:
The OHBM Nominating C
; Abort
> ERROR:
> ERROR: xcerebralseg --s M87151031-2016002-BL
> gtmseg exited with errors
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
University of Pittsburgh
> Personal website: jamiehanson.org <http://jamiehanson.org/>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/frees
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fa
table-pub-v5.3.0
> 3) Data is MPRAGE directly from a siemens machine
> *
> *
> *Caleb C. Comoglio, BSBME
> *
> Graduate Research Fellow
> Bioelectronics Laboratory, IUPUI
> ccomo...@iupui.edu <mailto:ccomo...@iupui.edu>
> (574) 727-1620
>
>
> ______
ey Laboratory of Mental Health
> and Cognitive Science of Guangdong Province, School of Psychology, South
> China Normal University, Guangzhou 510631, P. R. China
>
>
>
>
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr
t
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/fil
please include previous correspondence. we get a lot of emails here and
can't remember the context of each one.
thanks
On 01/11/2017 03:17 PM, Jamie Hanson wrote:
>
> I'm seeing it for multiple subjects, same issue. I can't get passed
> the autorecon1 steps. Any
he error however still persists (even using the dev version). Anyone
> else run into this issue or have thoughts about troubleshooting it?
> Thanks much!
>
> Best,
> Jamie.
>
> --
> Jamie Hanson
> Assistant Professor, Psychology
> Research Scientist, Learning Research
t;>).
> The error however still persists (even using the dev version).
> Anyone else run into this issue or have thoughts about
> troubleshooting it? Thanks much!
>
> Best,
> Jamie.
>
> --
> Jamie Hanson
>
for this inaccuracy? How should I correct this type
> of missegmentation?
>
> Best Regards,
> Gabor
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/
fyi
Forwarded Message
Subject:OHBM 2017 Call For Council Nominations
Date: Thu, 12 Jan 2017 12:42:40 -0600
From: i...@humanbrainmapping.org
Reply-To: i...@humanbrainmapping.org
To: gr...@nmr.mgh.harvard.edu
Dear Douglas,
The OHBM Nominating Committee i
g used.
>
> Thanks,
> Chris Markiewicz
>
>
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MGH-NMR Center
gr...@nmr.mgh.ha
l was sent to you in error and
> the e-mail contains patient information, please contact the Partners
> Compliance HelpLine at http://www.partners.org/complianceline . If the
> e-mail was sent to you in error but does not contain patient
> information, please contact the sender
l;
> else
> rho1mn.vol = mean(rho1.vol,4);
> end
>
> Best,
> Michael
>
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harva
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
bers for "projfrac" ?
No, PVEs can't be avoided that way.
> Bests,
> John
> *Sent:* Thursday, January 12, 2017 at 5:08 PM
> *From:* "Douglas N Greve"
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] surface based analysis (projfrac)
t; Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: ht
than zero means the surface based analysis
> > is running at a lower level of the white matter.
> Yes
> > Can the issue of the partial volume effect be avoided by using larger
> > numbers for "projfrac" ?
> No, PVEs can't be avoided that way.
> > Bests,
&
> 0.01". How can I check that this differnce is a real differnce and
> not related to partial volume effect?
> Best,
> John
> *Sent:* Friday, January 13, 2017 at 2:46 PM
> *From:* "Douglas N Greve"
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re:
January 13, 2017 at 3:16 PM
> *From:* "Douglas N Greve"
> *To:* freesurfer@nmr.mgh.harvard.edu
> *Subject:* Re: [Freesurfer] surface based analysis (projfrac)
> These differences are hard to track down because they are so subtle.
>
> You may want to use our PET module,
en’s Hospital
>
> 221 Longwood Avenue, Braunwald Building, Room LM116
>
> Boston, MA 02115
>
> /x...@bwh.harvard.edu <mailto:x...@bwh.harvard.edu>/
>
> //
>
> //
>
> //
>
>
>
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please share your thoughts on this, why the area displayed
> in terminal window is not matching with the one shown in qdec ?
>
> Thanks.
>
>
>
>
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> https://m
aling or is
> it already taken care of ?
>
> Are there references that have used free surfer to report group analyses for
> cortical volume ? Can someone point to a few ?
>
> Thanks
>
> Ri
> ___________
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factors adjusted' values using
> FreeSurfer?
>
> Best Regards,
> Hiroki
>
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MGH-NMR Ce
t;
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2
ons for mri_segstats, but I'm not 100% confident in what I've done
> - so any tips would be greatly appreciated.
>
>
> Many thanks
> Eli
>
>
>
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https:/
Are there anything wrong?
>
> Best Regards,
> Hiroki
>
>
> On Wed, 18 Jan 2017 15:20:39 -0500, Douglas N Greve
> wrote:
>> what are your command lines?
>>
>>
>> On 01/18/2017 01:39 AM, hiroki.s...@med.tohoku.ac.jp wrote:
>>> Dear experts,
&
t;
> Thank you very much,
>
> Jen
>
>
>
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617
ex if
> there is a relation between CT and the t of a fMRI contrast.
> Thanks!
> Gari
>
>
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tor areas?
>
> Putamen?
>
> Angular Gyrus?
>
> Thank you for your help
>
> Sincerely,
>
> Marianna
>
>
>
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gt; ___________
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs:
atter, which might be a reason to use a
> different FWHM on the surface?
>
> Thank you very much,
> Caspar
>
>
>
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n version 5.1.
> Please advise.
> Thanks, Caspar
>
>
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
lmfit as --y pcc.nii, or should I re-run
> isxconcat-sess without -m pcc?
> Thanks again, Caspar
>
>
>
> 2013/9/23 Douglas N Greve <mailto:gr...@nmr.mgh.harvard.edu>>
>
> Hi Caspar, just use -m pcc in isxconcat-sess and continue as
> normal with
> the
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
w
ondering if you knew of any references or sites I could reference to justify
> this level of smoothing.
>
> Tara
>
> - Original Message -
> From: "Marie Schaer"
> To: "Douglas N Greve"
> Cc: "Nick Schmansky" ,
> freesurfer@nmr.mgh.ha
arvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
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