But before you do, you should note that you cannot use fMRI data as input to FS.
On 11/24/2016 01:11 PM, Bruce Fischl wrote: > Hi James > > you need to send us the full command line that you ran and the entire > screen output. > > cheers > Bruce > On Wed, 23 Nov 2016, James Wilks wrote: > >> Hello,I’ve been having a problem with recon-all lately. I’m >> relatively new to >> FreeSurfer and the processes that I have done in the past have been >> done on >> sample individualized scans in my lab and I ran into an issue once I >> started >> trying to run FreeSurfer on fMRI data provided by our lab. Whenever I >> try to run >> the command this is the generated output: >> >> #@# MotionCor Wed Nov 23 11:01:54 EST 2016 >> Found 1 runs >> /export/home/jawilks/Desktop/freesurfer/subjects/run_02/mri/orig/001.mgz >> Checking for (invalid) multi-frame inputs... >> ERROR: input(s) cannot have multiple frames! >> /export/home/jawilks/Desktop/freesurfer/subjects/run_02/mri/orig/001.mgz >> has 160 >> frames >> Linux tykwer.engin.umich.edu 2.6.18-416.el5 #1 SMP Wed Oct 26 >> 12:04:18 EDT 2016 >> x86_64 x86_64 x86_64 GNU/Linux >> >> recon-all -s run_02 exited with ERRORS at Wed Nov 23 11:01:57 EST 2016 >> >> The archives have not been of any help and I would greatly appreciate >> it if >> someone would be able to help point me in the right direction. >> >> Thank You >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
